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173K 下的 -[4-(三氟甲基)苯基]苯甲酰胺和 -(4-甲氧基苯基)苯甲酰胺的晶体结构:对晶体堆积引起的构象变化能量学的研究

Crystal structures of -[4-(tri-fluoro-meth-yl)phen-yl]benzamide and -(4-meth-oxy-phen-yl)benz-amide at 173 K: a study of the energetics of conformational changes due to crystal packing.

作者信息

Pearson Wayne H, Urban Joseph J, MacArthur Amy H Roy, Lin Shirley, Cabrera Dylan W L

机构信息

Chemistry Department, United States Naval Academy, 572 Holloway Rd, Annapolis, MD 21402, USA.

出版信息

Acta Crystallogr E Crystallogr Commun. 2022 Feb 8;78(Pt 3):297-305. doi: 10.1107/S2056989022000950. eCollection 2022 Feb 1.

DOI:10.1107/S2056989022000950
PMID:35371548
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8900516/
Abstract

As a part of our study of the syntheses of aryl amides, the crystal structures of two benzamides were determined from single-crystal X-ray data at 173 K. Both crystal structures contain mol-ecular units as asymmetric units with no solvent in the unit cells. Crystal structure I, , is the result of the crystallization of -[4-(tri-fluoro-meth-yl)phen-yl]benzamide, CHFNO. Crystal structure II, , is composed of -(4-meth-oxy-phen-yl)benzamide, CHNO, units. is triclinic, space group , consisting of two mol-ecules in the unit cell related by the center of symmetry. is monoclinic, space group 2/, consisting of four mol-ecules in the unit cell. Both types of mol-ecules contain three planar regions; a phenyl ring, an amide planar region, and a -substituted phenyl ring. The orientations of these planar regions within the asymmetric units are compared to their predicted orientations, in isolation, from DFT calculations. The aryl rings are tilted approximately 60° with respect to each other in both experimentally determined structures, as compared to 30° in the DFT results. These conformational changes result in more favorable environments for N-H⋯O hydrogen bonding and aryl ring π-stacking in the crystal structures. Inter-molecular inter-actions were examined by Hirshfeld surface analysis and qu-anti-fied by calculating mol-ecular inter-action energies. The results of this study demonstrate that both hydrogen bonding and dispersion are essential to the side-by-side stacking of mol-ecular units in these crystal structures. Weaker dispersion inter-actions along the axial directions of the mol-ecules reveal insight into the melting mechanisms of these crystals.

摘要

作为我们对芳基酰胺合成研究的一部分,在173 K下通过单晶X射线数据测定了两种苯甲酰胺的晶体结构。两种晶体结构均包含作为不对称单元的分子单元,晶胞中无溶剂。晶体结构I, ,是 -[4-(三氟甲基)苯基]苯甲酰胺CHFNO结晶的结果。晶体结构II, ,由 -(4-甲氧基苯基)苯甲酰胺CHNO单元组成。 为三斜晶系,空间群 ,晶胞中含有两个通过对称中心相关的分子。 为单斜晶系,空间群2/,晶胞中含有四个分子。两种类型的分子均包含三个平面区域:一个苯环、一个酰胺平面区域和一个 -取代苯环。将不对称单元内这些平面区域的取向与其从DFT计算中孤立预测的取向进行比较。与DFT结果中的30°相比,在两个实验测定的结构中,芳环彼此倾斜约60°。这些构象变化在晶体结构中为N-H⋯O氢键和芳环π堆积创造了更有利的环境。通过Hirshfeld表面分析研究分子间相互作用,并通过计算分子相互作用能进行量化。本研究结果表明,氢键和色散对于这些晶体结构中分子单元的并排堆积都是必不可少的。沿分子轴向较弱的色散相互作用揭示了这些晶体的熔化机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/b51dc6b20594/e-78-00297-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/3b1ba130b9fa/e-78-00297-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/4734490e7bd4/e-78-00297-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/6a0592c873bd/e-78-00297-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/00cecd0d8d9d/e-78-00297-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/aea3831db76a/e-78-00297-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/a429adf9ca1f/e-78-00297-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/223d26509615/e-78-00297-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/afe4ac521d02/e-78-00297-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/b51dc6b20594/e-78-00297-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/3b1ba130b9fa/e-78-00297-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/4734490e7bd4/e-78-00297-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/6a0592c873bd/e-78-00297-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/00cecd0d8d9d/e-78-00297-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/aea3831db76a/e-78-00297-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/a429adf9ca1f/e-78-00297-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/223d26509615/e-78-00297-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/afe4ac521d02/e-78-00297-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c140/8900516/b51dc6b20594/e-78-00297-fig9.jpg

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