Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Orsay, France.
Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, CNRS, Sorbonne Université, Muséum National d'Histoire Naturelle, Paris, France.
mBio. 2022 Apr 26;13(2):e0030722. doi: 10.1128/mbio.00307-22. Epub 2022 Apr 6.
Determining the precise limits of life in polyextreme environments is challenging. Studies along gradients of polyextreme conditions in the Dallol proto-volcano area (Danakil salt desert, Ethiopia) showed the occurrence of archaea-dominated communities (up to 99%) in several hypersaline systems but strongly suggested that life did not thrive in the hyperacidic (pH ∼0), hypersaline (∼35% [wt/vol],) and sometimes hot (up to 108°C) ponds of the Dallol dome. However, it was recently claimed that archaea flourish in these brines based on the detection of one 16S rRNA gene and fluorescent hybridization (FISH) experiments with archaea-specific probes. Here, we characterized the diversity of microorganisms in aerosols over Dallol, and we show that, in addition to typical bacteria from soil/dust, they transport halophilic archaea likely originating from neighboring hypersaline ecosystems. We also show that cells and DNA from cultures and natural local halophilic communities are rapidly destroyed upon contact with Dallol brine. Furthermore, we confirm the widespread occurrence of mineral particles, including silica-based biomorphs, in Dallol brines. FISH experiments using appropriate controls show that DNA fluorescent probes and dyes unspecifically bind to mineral precipitates in Dallol brines; cellular morphologies were unambiguously observed only in nearby hypersaline ecosystems. Our results show that airborne cell dispersal and unspecific binding of fluorescent probes are confounding factors likely affecting previous inferences of archaea thriving in Dallol. They highlight the need for controls and the consideration of alternative abiotic explanations before safely drawing conclusions about the presence of life in polyextreme terrestrial or extraterrestrial systems. Determining the precise limits of life in polyextreme environments is challenging. Confounding factors such as exogenous contamination and the abiotic formation of structures resembling cells need to be considered before concluding on the unambiguous development of microbial life in low-biomass environments. Here, we explored how these factors can affect contrasting reports about microbial life thriving in the hypersaline and hyperacidic brines of the Dallol geothermal field (Danakil Depression, Ethiopia). We show not only that aerosols actively transport a wide diversity of prokaryotic and eukaryotic cells over Dallol but also that, upon contact with the chaotropic hyperacidic brine, cells and DNA are rapidly degraded. We also show the extant occurrence of mineral (mostly silica-based) biomorphs that unspecifically bind fluorescent probes and dyes. Our study highlights the need for controls and the consideration of alternative abiotic explanations before safely drawing conclusions on the presence of life in polyextreme terrestrial or extraterrestrial systems.
确定极端环境中生命的精确极限具有挑战性。在多极端条件下的梯度研究表明,在几个高盐系统中存在以古菌为主的群落(高达 99%),但强烈表明生命并没有在多洛尔穹顶的超酸性(pH 约为 0)、高盐(约 35%[重量/体积])和有时炎热(高达 108°C)的池塘中繁盛。然而,最近有人声称,根据检测到的一个 16S rRNA 基因和针对古菌的荧光杂交(FISH)实验,古菌在这些盐水中大量繁殖。在这里,我们描述了多洛尔上空气溶胶中微生物的多样性,并表明,除了来自土壤/灰尘的典型细菌外,它们还运输可能来自邻近高盐生态系统的嗜盐古菌。我们还表明,与多洛尔盐水接触后,培养物和自然局部嗜盐群落的细胞和 DNA 会迅速被破坏。此外,我们还证实了矿物颗粒(包括基于硅的生物形态)在多洛尔盐水中的广泛存在。使用适当对照的 FISH 实验表明,DNA 荧光探针和染料会非特异性地与多洛尔盐水中的矿物沉淀物结合;只有在附近的高盐生态系统中才能明确观察到细胞形态。我们的结果表明,空气传播的细胞分散和荧光探针的非特异性结合是混淆因素,可能影响以前关于多洛尔古菌繁盛的推断。它们强调了在安全地得出关于多极端陆地或外星系统中存在生命的结论之前,需要控制并考虑替代非生物解释。确定极端环境中生命的精确极限具有挑战性。在得出微生物生命在低生物量环境中明确发展的结论之前,需要考虑外来污染和类似细胞结构的非生物形成等混杂因素。在这里,我们探讨了这些因素如何影响关于在多洛尔地热田(埃塞俄比亚达纳基尔洼地)的高盐和超酸性盐水中微生物生命蓬勃发展的对比报告。我们不仅表明,气溶胶在多洛尔上空积极传输广泛的原核和真核细胞多样性,而且还表明,与嗜热的超酸性盐水接触后,细胞和 DNA 会迅速降解。我们还展示了现存的矿物(主要是基于硅的)生物形态,它们会非特异性地结合荧光探针和染料。我们的研究强调了在安全地得出关于多极端陆地或外星系统中存在生命的结论之前,需要控制并考虑替代非生物解释。