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环状RNA的生物合成、检测及功能简述

A Brief Review of circRNA Biogenesis, Detection, and Function.

作者信息

Liang Ying, Liu Niannian, Yang Le, Tang Jianjun, Wang Yinglong, Mei Meng

机构信息

College of Computer and Information Engineering, Jiangxi Agricultural University, Nanchang, China.

Department of Basic teaching, Jiangxi Business School, Nanchang, China.

出版信息

Curr Genomics. 2021 Dec 31;22(7):485-495. doi: 10.2174/1389202922666210331130722.

DOI:10.2174/1389202922666210331130722
PMID:35386433
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8905635/
Abstract

Circular RNA (circRNA) is a non-coding molecule produced through alternative splicing of one or more exons of a gene in the presence of an RNA-induced silencing complex (RISC). Its formation depends on complementary intron sequences on both sides of the circularized sequence. CircRNA functions as a sponge for miRNA, playing the role of the transcriptional regulator or potential biomarker. It has an impact on fetal growth and on synaptic facilitation in the brain. In this review, we illustrate biogenesis mechanisms, characteristics, and functions of cirRNAs. We also summarize methods using sequence feature and RNA next-generation sequencing data for circRNA prediction. Finally, we discuss the state of the research on circRNA in diseases, which will bring new contributions to future disease treatments.

摘要

环状RNA(circRNA)是一种非编码分子,在RNA诱导沉默复合体(RISC)存在的情况下,通过基因一个或多个外显子的可变剪接产生。其形成取决于环化序列两侧的互补内含子序列。CircRNA作为miRNA的海绵,发挥转录调节因子或潜在生物标志物的作用。它对胎儿生长和大脑中的突触促进有影响。在本综述中,我们阐述了circRNA的生物发生机制、特征和功能。我们还总结了利用序列特征和RNA下一代测序数据进行circRNA预测的方法。最后,我们讨论了circRNA在疾病研究中的现状,这将为未来的疾病治疗带来新的贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5f0/8905635/2d717827be4f/CG-22-485_F1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5f0/8905635/2d717827be4f/CG-22-485_F1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5f0/8905635/2d717827be4f/CG-22-485_F1.jpg

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本文引用的文献

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DeepciRGO: functional prediction of circular RNAs through hierarchical deep neural networks using heterogeneous network features.DeepciRGO:通过使用异构网络特征的分层深度神经网络对环状 RNA 进行功能预测。
BMC Bioinformatics. 2020 Nov 12;21(1):519. doi: 10.1186/s12859-020-03748-3.
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Identifying Circular RNA and Predicting Its Regulatory Interactions by Machine Learning.通过机器学习识别环状RNA并预测其调控相互作用
Front Genet. 2020 Jul 21;11:655. doi: 10.3389/fgene.2020.00655. eCollection 2020.
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Modeling circRNA expression pattern with integrated sequence and epigenetic features demonstrates the potential involvement of H3K79me2 in circRNA expression.
Adv Exp Med Biol. 2025;1485:75-95. doi: 10.1007/978-981-96-9428-0_6.
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Circular RNAs: key regulators of paclitaxel sensitivity and resistance in cancer.环状RNA:癌症中紫杉醇敏感性和耐药性的关键调节因子
Eur J Med Res. 2025 Aug 18;30(1):758. doi: 10.1186/s40001-025-03045-w.
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Navigating the Landscape of Liquid Biopsy in Colorectal Cancer: Current Insights and Future Directions.探索结直肠癌液体活检领域:当前见解与未来方向
Int J Mol Sci. 2025 Aug 6;26(15):7619. doi: 10.3390/ijms26157619.
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Developmental Regulation of circRNAs in Normal and Diseased Mammary Gland: A Focus on circRNA-miRNA Networks.正常与患病乳腺中环状RNA的发育调控:聚焦环状RNA-微小RNA网络
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7
Circ-ITCH promotes the ubiquitination degradation of HOXC10 to facilitate osteogenic differentiation in disuse osteoporosis through stabilizing BRCA1 mRNA via IGF2BP2-mediated mA modification.环状 ITCH 通过 IGF2BP2 介导的 mA 修饰稳定 BRCA1 mRNA,促进 HOXC10 的泛素化降解,以促进废用性骨质疏松症中的成骨分化。
J Transl Med. 2025 Mar 27;23(1):376. doi: 10.1186/s12967-024-06050-5.
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Liquid biopsy in cancer current: status, challenges and future prospects.癌症液体活检的现状、挑战与未来前景
Signal Transduct Target Ther. 2024 Dec 2;9(1):336. doi: 10.1038/s41392-024-02021-w.
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Cardiovasc Toxicol. 2024 Nov;24(11):1151-1167. doi: 10.1007/s12012-024-09914-w. Epub 2024 Aug 19.
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Front Oncol. 2024 Jul 15;14:1430051. doi: 10.3389/fonc.2024.1430051. eCollection 2024.
通过整合序列和表观遗传特征来模拟 circRNA 表达模式,表明 H3K79me2 可能参与 circRNA 的表达。
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