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通过对法国女性全基因组数据的分析确定皮肤衰老相关的新生物学途径。

Identification of New Biological Pathways Involved in Skin Aging From the Analysis of French Women Genome-Wide Data.

作者信息

Rahmouni Myriam, Laville Vincent, Spadoni Jean-Louis, Jdid Randa, Eckhart Leopold, Gruber Florian, Labib Taoufik, Coulonges Cedric, Carpentier Wassila, Latreille Julie, Morizot Frederique, Tschachler Erwin, Ezzedine Khaled, Le Clerc Sigrid, Zagury Jean-François

机构信息

Équipe Génomique, Bioinformatique et Chimie Moléculaire (EA 7528), Conservatoire National des Arts et Métiers, HESAM Université, Paris, France.

Chanel R&T, Department of Skin Knowledge and Women Beauty, Pantin, France.

出版信息

Front Genet. 2022 Mar 24;13:836581. doi: 10.3389/fgene.2022.836581. eCollection 2022.

Abstract

Skin aging is an ineluctable process leading to the progressive loss of tissue integrity and is characterized by various outcomes such as wrinkling and sagging. Researchers have identified impacting environmental factors (sun exposure, smoking, etc.) and several molecular mechanisms leading to skin aging. We have previously performed genome-wide association studies (GWAS) in 502 very-well characterized French women, looking for associations with four major outcomes of skin aging, namely, photoaging, solar lentigines, wrinkling, and sagging, and this has led to new insights into the molecular mechanisms of skin aging. Since individual SNP associations in GWAS explain only a small fraction of the genetic impact in complex polygenic phenotypes, we have made the integration of these genotypes into the reference Kegg biological pathways and looked for associations by the gene set enrichment analysis (GSEA) approach. 106 pathways were tested for association with the four outcomes of skin aging. This biological pathway analysis revealed new relevant pathways and genes, some likely specific of skin aging such as the and genes in the "melanogenesis" pathway and some likely involved in global aging such as the gene in the "nucleotide excision repair" pathway, not picked up in the previously published GWAS. Overall, our results suggest that the four outcomes of skin aging possess specific molecular mechanisms such as the "proteasome" and "mTOR signaling pathway" but may also share common molecular mechanisms such as "nucleotide excision repair."

摘要

皮肤老化是一个不可避免的过程,会导致组织完整性逐渐丧失,其特征表现为诸如皱纹和松弛等多种结果。研究人员已经确定了影响皮肤老化的环境因素(日晒、吸烟等)以及几种导致皮肤老化的分子机制。我们之前对502名特征明确的法国女性进行了全基因组关联研究(GWAS),寻找与皮肤老化的四个主要结果,即光老化、日光性雀斑、皱纹和松弛之间的关联,这为皮肤老化的分子机制带来了新的见解。由于GWAS中的单个单核苷酸多态性(SNP)关联仅解释了复杂多基因表型中遗传影响的一小部分,我们将这些基因型整合到参考的京都基因与基因组百科全书(KEGG)生物学通路中,并通过基因集富集分析(GSEA)方法寻找关联。对106条通路进行了与皮肤老化的四个结果的关联测试。这种生物学通路分析揭示了新的相关通路和基因,一些可能是皮肤老化特有的,如“黑色素生成”通路中的 和 基因,一些可能参与整体老化,如“核苷酸切除修复”通路中的 基因,这些在之前发表的GWAS中未被发现。总体而言,我们的结果表明,皮肤老化的四个结果具有特定的分子机制,如“蛋白酶体”和“mTOR信号通路”,但也可能共享共同的分子机制,如“核苷酸切除修复”。

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