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转录起始位点下游单个CpG甲基化对基因表达的调控。

Regulation of expression by single CpG methylation in downstream of transcription initiation site.

作者信息

Lian Benedict Shi Xiang, Kawasaki Takumi, Kano Norisuke, Ori Daisuke, Ikegawa Moe, Isotani Ayako, Kawai Taro

机构信息

Laboratory of Molecular Immunobiology, Division of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology (NAIST), Nara 630-0192, Japan.

Laboratory of Organ Developmental Engineering, Division of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology (NAIST), Nara 630-0192, Japan.

出版信息

iScience. 2022 Mar 18;25(4):104118. doi: 10.1016/j.isci.2022.104118. eCollection 2022 Apr 15.

DOI:10.1016/j.isci.2022.104118
PMID:35402874
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8983349/
Abstract

The innate immune system is an immediate defense against infectious pathogens by the production of inflammatory cytokines and other mediators. Deficiencies of epigenetic regulatory enzymes, such as and , cause dysregulation of cytokine expression. However, it is unclear if DNA methylation at a single CpG dinucleotide in a specific gene locus can regulate gene expression. In this study, we demonstrated that CpG+286 and CpG+348 in exon 2 of the gene are similar in various primary mouse cells. In lipopolysaccharide-stimulated condition, hypomethylated CpG+286 promoted expression whereas deletion of CpG+348 led to a reduction in expression associated with enhanced CTCF binding to the locus. Moreover, hypomethylation at CpG+286 in alveolar macrophages from aged mice led to higher expression in response to LPS compared with young mice. Thus, DNA methylation at specific CpG dinucleotides plays an important regulatory role in expression.

摘要

先天性免疫系统通过产生炎性细胞因子和其他介质对感染性病原体进行即时防御。表观遗传调控酶(如 和 )的缺陷会导致细胞因子表达失调。然而,尚不清楚特定基因座中单个CpG二核苷酸处的DNA甲基化是否能调节基因表达。在本研究中,我们证明了 基因外显子2中的CpG+286和CpG+348在各种原代小鼠细胞中是相似的。在脂多糖刺激条件下,低甲基化的CpG+286促进 表达,而删除CpG+348导致 表达降低,这与CTCF与 基因座的结合增强有关。此外,与年轻小鼠相比,老年小鼠肺泡巨噬细胞中CpG+286处的低甲基化导致对脂多糖反应时 表达更高。因此,特定CpG二核苷酸处的DNA甲基化在 表达中起重要的调节作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/6cbca1842c69/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/529eef338401/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/78ae673063f1/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/4916dcb1d8f0/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/9b9fa8c1845c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/eda2a3c81308/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/dd86e6d9d1e7/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/6cbca1842c69/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/529eef338401/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/78ae673063f1/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/4916dcb1d8f0/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/9b9fa8c1845c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/eda2a3c81308/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/dd86e6d9d1e7/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cc5/8983349/6cbca1842c69/gr6.jpg

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2
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Int Immunol. 2021 Mar 1;33(3):127-148. doi: 10.1093/intimm/dxaa078.
3
Ensembl 2021.Ensembl 2021.
Nutrients. 2024 Dec 30;17(1):106. doi: 10.3390/nu17010106.
4
Infection-induced trained immunity: a twist in paradigm of innate host defense and generation of immunological memory.感染诱导的训练免疫:固有宿主防御范式的转变与免疫记忆的产生。
Infect Immun. 2025 Jan 31;93(1):e0047224. doi: 10.1128/iai.00472-24. Epub 2024 Dec 10.
5
Disrupting CENP-N mediated SEPT9 methylation as a strategy to inhibit aerobic glycolysis and liver metastasis in colorectal cancer.破坏 CENP-N 介导的 SEPT9 甲基化作为抑制结直肠癌细胞有氧糖酵解和肝转移的策略。
Clin Exp Metastasis. 2024 Dec;41(6):971-988. doi: 10.1007/s10585-024-10316-z. Epub 2024 Oct 19.
6
Quantitative transcriptomic and epigenomic data analysis: a primer.定量转录组学和表观基因组数据分析:入门指南
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Sci Rep. 2024 Mar 22;14(1):6904. doi: 10.1038/s41598-024-56547-8.
8
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