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花粉粒的多标记显微图像检测与识别。

Detection and Recognition of Pollen Grains in Multilabel Microscopic Images.

机构信息

Department of Applied Mathematics and Computer Science, University of Life Sciences in Lublin, Głęboka 28, 20-950 Lublin, Poland.

Department of Botany and Plant Physiology, University of Life Sciences in Lublin, Akademicka 15, 20-950 Lublin, Poland.

出版信息

Sensors (Basel). 2022 Mar 31;22(7):2690. doi: 10.3390/s22072690.

Abstract

Analysis of pollen material obtained from the Hirst-type apparatus, which is a tedious and labor-intensive process, is usually performed by hand under a microscope by specialists in palynology. This research evaluated the automatic analysis of pollen material performed based on digital microscopic photos. A deep neural network called YOLO was used to analyze microscopic images containing the reference grains of three taxa typical of Central and Eastern Europe. YOLO networks perform recognition and detection; hence, there is no need to segment the image before classification. The obtained results were compared to other deep learning object detection methods, i.e., Faster R-CNN and RetinaNet. YOLO outperformed the other methods, as it gave the mean average precision (mAP@.5:.95) between 86.8% and 92.4% for the test sets included in the study. Among the difficulties related to the correct classification of the research material, the following should be noted: significant similarities of the grains of the analyzed taxa, the possibility of their simultaneous occurrence in one image, and mutual overlapping of objects.

摘要

从 Hirst 型仪器中获取的花粉材料的分析是一个繁琐且劳动密集型的过程,通常由孢粉学专家在显微镜下手动进行。本研究评估了基于数字显微照片的花粉材料的自动分析。使用一种名为 YOLO 的深度神经网络来分析包含三种中欧和东欧典型分类群参考颗粒的显微图像。YOLO 网络执行识别和检测,因此在分类之前不需要对图像进行分割。将获得的结果与其他深度学习目标检测方法(即 Faster R-CNN 和 RetinaNet)进行了比较。YOLO 的表现优于其他方法,因为它在研究中包含的测试集中的平均准确率(mAP@.5:.95)在 86.8%至 92.4%之间。在正确分类研究材料相关的困难中,应注意以下几点:分析类群的颗粒之间存在显著的相似性,它们可能同时出现在一个图像中,并且物体相互重叠。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7691/9002382/7264bdb17945/sensors-22-02690-g001.jpg

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