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揭示新型葡聚糖结合域的与糖苷水解酶家族 17β-1,3-葡聚糖酶相关的未知区域的特性。

Characterization of an Unknown Region Linked to the Glycoside Hydrolase Family 17 β-1,3-Glucanase of Reveals a Novel Glucan-Binding Domain.

机构信息

Faculty of Fisheries Sciences, Hokkaido University, Hakodate 041-8611, Japan.

Research Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan.

出版信息

Mar Drugs. 2022 Mar 31;20(4):250. doi: 10.3390/md20040250.

DOI:10.3390/md20040250
PMID:35447923
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9026390/
Abstract

The glycoside hydrolase family 17 β-1,3-glucanase of (VvGH17) has two unknown regions in the N- and C-termini. Here, we characterized these domains by preparing mutant enzymes. VvGH17 demonstrated hydrolytic activity of β-(1→3)-glucan, mainly producing laminaribiose, but not of β-(1→3)/β-(1→4)-glucan. The C-terminal-truncated mutants (ΔC466 and ΔC441) showed decreased activity, approximately one-third of that of the WT, and ΔC415 lost almost all activity. An analysis using affinity gel containing laminarin or barley β-glucan revealed a shift in the mobility of the ΔC466, ΔC441, and ΔC415 mutants compared to the WT. Tryptophan residues showed a strong affinity for carbohydrates. Three of four point-mutations of the tryptophan in the C-terminus (W472A, W499A, and W542A) showed a reduction in binding ability to laminarin and barley β-glucan. The C-terminus was predicted to have a β-sandwich structure, and three tryptophan residues (Trp472, Trp499, and Trp542) constituted a putative substrate-binding cave. Linker and substrate-binding functions were assigned to the C-terminus. The N-terminal-truncated mutants also showed decreased activity. The WT formed a trimer, while the N-terminal truncations formed monomers, indicating that the N-terminus contributed to the multimeric form of VvGH17. The results of this study are useful for understanding the structure and the function of GH17 β-1,3-glucanases.

摘要

(VvGH17)糖苷水解酶家族 17 β-1,3-葡聚糖酶的 N-和 C-末端有两个未知区域。在这里,我们通过制备突变酶来表征这些结构域。VvGH17 表现出 β-(1→3)-葡聚糖的水解活性,主要产生麦芽三糖,但不产生 β-(1→3)/β-(1→4)-葡聚糖。C 末端截断突变体(ΔC466 和 ΔC441)显示出活性降低,约为 WT 的三分之一,而 ΔC415 几乎失去了所有活性。使用含有昆布多糖或大麦β-葡聚糖的亲和凝胶进行的分析表明,与 WT 相比,ΔC466、ΔC441 和 ΔC415 突变体的迁移率发生了变化。色氨酸残基对碳水化合物表现出很强的亲和力。C 末端四个色氨酸中的三个点突变(W472A、W499A 和 W542A)显示出与昆布多糖和大麦β-葡聚糖结合能力的降低。预测 C 末端具有β-三明治结构,三个色氨酸残基(Trp472、Trp499 和 Trp542)构成一个假定的底物结合腔。连接子和底物结合功能被分配到 C 末端。N 末端截断突变体也显示出活性降低。WT 形成三聚体,而 N 末端截断形成单体,表明 N 末端有助于 VvGH17 的多聚体形式。本研究的结果有助于理解 GH17 β-1,3-葡聚糖酶的结构和功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/b39ba7ab1a5c/marinedrugs-20-00250-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/2bc29c30cd59/marinedrugs-20-00250-g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/6e0e6a82f4b7/marinedrugs-20-00250-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/d98a48978d8e/marinedrugs-20-00250-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/8470c2de2ace/marinedrugs-20-00250-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/2adf96c34619/marinedrugs-20-00250-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/b39ba7ab1a5c/marinedrugs-20-00250-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/2bc29c30cd59/marinedrugs-20-00250-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/b24e581be7bd/marinedrugs-20-00250-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/45dd6e945fba/marinedrugs-20-00250-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/6e0e6a82f4b7/marinedrugs-20-00250-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/d98a48978d8e/marinedrugs-20-00250-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/8470c2de2ace/marinedrugs-20-00250-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/2adf96c34619/marinedrugs-20-00250-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad3/9026390/b39ba7ab1a5c/marinedrugs-20-00250-g008.jpg

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