碳水化合物活性酶数据库:功能和文献。

The carbohydrate-active enzyme database: functions and literature.

机构信息

Aix Marseille Univ, CNRS, UMR7257 AFMB, Marseille, France.

INRAE, USC1408 AFMB, Marseille, France.

出版信息

Nucleic Acids Res. 2022 Jan 7;50(D1):D571-D577. doi: 10.1093/nar/gkab1045.

Abstract

Thirty years have elapsed since the emergence of the classification of carbohydrate-active enzymes in sequence-based families that became the CAZy database over 20 years ago, freely available for browsing and download at www.cazy.org. In the era of large scale sequencing and high-throughput Biology, it is important to examine the position of this specialist database that is deeply rooted in human curation. The three primary tasks of the CAZy curators are (i) to maintain and update the family classification of this class of enzymes, (ii) to classify sequences newly released by GenBank and the Protein Data Bank and (iii) to capture and present functional information for each family. The CAZy website is updated once a month. Here we briefly summarize the increase in novel families and the annotations conducted during the last 8 years. We present several important changes that facilitate taxonomic navigation, and allow to download the entirety of the annotations. Most importantly we highlight the considerable amount of work that accompanies the analysis and report of biochemical data from the literature.

摘要

自 30 年前出现基于序列的碳水化合物活性酶分类以来,已经过去了 30 年,这些分类成为了 20 多年前的 CAZy 数据库,可在www.cazy.org 上免费浏览和下载。在大规模测序和高通量生物学时代,检查这个深深扎根于人类策展的专业数据库的位置非常重要。CAZy 策展人的三个主要任务是:(i) 维护和更新该酶类的家族分类,(ii) 对 GenBank 和蛋白质数据库新发布的序列进行分类,(iii) 捕获和呈现每个家族的功能信息。CAZy 网站每月更新一次。在这里,我们简要总结了过去 8 年来新家族的增加和注释。我们介绍了几个重要的更改,这些更改便于分类浏览,并允许下载全部注释。最重要的是,我们强调了伴随文献中生化数据的分析和报告所需要的大量工作。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc2f/8728194/fdcea96bbebf/gkab1045fig1.jpg

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