Methodologies for the Discovery of Transposable Element Families.

The discovery and characterization of transposable element (TE) families are crucial tasks in the process of genome annotation. Careful curation of TE libraries for each organism is necessary as each has been exposed to a unique and often complex set of TE families. methods have been developed; however, a fully automated and accurate approach to the development of complete libraries remains elusive. In this review, we cover established methods and recent developments in TE analysis. We also present various methodologies used to assess these tools and discuss opportunities for further advancement of the field.