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一个用于评估酵母质膜转运蛋白“内与外”的化学生物组学工具包。

A Chemogenomic Toolkit to Evaluate the "Ins and Outs" of Yeast Plasma Membrane Transporters.

机构信息

Amity Institute of Biotechnology, Amity University Haryana, Gurugram, India.

Amity Institute of Integrative Sciences and Health, Amity University Haryana, Gurugram, India.

出版信息

mBio. 2022 Jun 28;13(3):e0095522. doi: 10.1128/mbio.00955-22. Epub 2022 Apr 25.

DOI:10.1128/mbio.00955-22
PMID:35467415
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9239070/
Abstract

Over the years, there has been a lot of emphasis on the development of high-throughput platforms that help identify transporters of drugs and xenobiotics. However, major hinderances in these approaches include substrate promiscuity and functional redundancy of membrane transporters. To tackle such issues, Almeida and colleagues (L. D. Almeida, A. S. F. Silva, D. C. Mota, A. A. Vasconcelos, et al., mBio 12(6):e03221-21, 2021) elegantly used the power of yeast genetics and created a double gene deletion library for 122 nonessential plasma membrane transporters that facilitates high-throughput identification of drug/xenobiotic transporters. While examining a library of cytotoxic compounds, the authors identified a strong correlation between the chemical structure of azoles and possible import/export routes. Interestingly, the authors also identified the -inositol transporter Itr1 to be responsible for import of triazole and imidazole antifungal compounds and proposed a role for the ABC transporter Pdr5 in carbendazim uptake.

摘要

多年来,人们一直强调开发高通量平台,以帮助识别药物和外源性化合物的转运蛋白。然而,这些方法的主要障碍包括底物的混杂性和膜转运蛋白的功能冗余。为了解决这些问题,Almeida 及其同事(L. D. Almeida、A. S. F. Silva、D. C. Mota、A. A. Vasconcelos 等人,mBio 12(6):e03221-21, 2021)巧妙地利用了酵母遗传学的力量,为 122 种非必需的质膜转运蛋白创建了一个双基因缺失文库,这使得高通量鉴定药物/外源性化合物转运蛋白变得更加容易。在研究细胞毒性化合物文库时,作者发现唑类化合物的化学结构与可能的进出口途径之间存在很强的相关性。有趣的是,作者还发现肌醇转运蛋白 Itr1 负责三唑和咪唑抗真菌化合物的摄取,并提出 ABC 转运蛋白 Pdr5 可能参与了苯并咪唑类农药的摄取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e03f/9239070/e9b12f39eb05/mbio.00955-22-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e03f/9239070/e9b12f39eb05/mbio.00955-22-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e03f/9239070/e9b12f39eb05/mbio.00955-22-f001.jpg

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本文引用的文献

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mBio. 2021 Dec 21;12(6):e0322121. doi: 10.1128/mbio.03221-21. Epub 2021 Dec 14.
2
Structure and efflux mechanism of the yeast pleiotropic drug resistance transporter Pdr5.酵母多药耐药转运蛋白 Pdr5 的结构和外排机制。
Nat Commun. 2021 Sep 6;12(1):5254. doi: 10.1038/s41467-021-25574-8.
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ATP binding cassette importers in eukaryotic organisms.真核生物中的ATP结合盒转运体
Biol Rev Camb Philos Soc. 2021 Aug;96(4):1318-1330. doi: 10.1111/brv.12702. Epub 2021 Mar 2.
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Identification of Novel High-Affinity Substrates of OCT1 Using Machine Learning-Guided Virtual Screening and Experimental Validation.利用机器学习引导的虚拟筛选和实验验证鉴定新型OCT1高亲和力底物
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5
Transportome-wide engineering of Saccharomyces cerevisiae.对酿酒酵母的转运组进行全工程改造。
Metab Eng. 2021 Mar;64:52-63. doi: 10.1016/j.ymben.2021.01.007. Epub 2021 Jan 16.
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A widespread role for SLC transmembrane transporters in resistance to cytotoxic drugs.SLC 跨膜转运蛋白在细胞毒性药物耐药中的广泛作用。
Nat Chem Biol. 2020 Apr;16(4):469-478. doi: 10.1038/s41589-020-0483-3. Epub 2020 Mar 9.
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Characterizing ABC-Transporter Substrate-Likeness Using a Clean-Slate Genetic Background.利用全新的遗传背景表征ABC转运蛋白底物相似性
Front Pharmacol. 2019 Apr 25;10:448. doi: 10.3389/fphar.2019.00448. eCollection 2019.
8
Azole resistance in a mutant lacking the ABC transporter depends on TOR signaling.唑类耐药突变体中 ABC 转运蛋白缺失依赖于 TOR 信号。
J Biol Chem. 2018 Jan 12;293(2):412-432. doi: 10.1074/jbc.M117.807032. Epub 2017 Nov 20.
9
Azole drug import into the pathogenic fungus Aspergillus fumigatus.唑类药物进入致病真菌烟曲霉的过程。
Antimicrob Agents Chemother. 2015;59(6):3390-8. doi: 10.1128/AAC.05003-14. Epub 2015 Mar 30.
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High-resolution chemical dissection of a model eukaryote reveals targets, pathways and gene functions.高分辨率化学剖析模型真核生物揭示靶点、通路和基因功能。
Microbiol Res. 2014 Feb-Mar;169(2-3):107-20. doi: 10.1016/j.micres.2013.11.004. Epub 2013 Dec 1.