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Using Natural Language Processing and Machine Learning to Preoperatively Predict Lymph Node Metastasis for Non-Small Cell Lung Cancer With Electronic Medical Records: Development and Validation Study.

作者信息

Hu Danqing, Li Shaolei, Zhang Huanyao, Wu Nan, Lu Xudong

机构信息

College of Biomedical Engineering and Instrumental Science, Zhejiang University, Hangzhou, China.

Department of Thoracic Surgery II, Peking University Cancer Hospital and Institute, Beijing, China.

出版信息

JMIR Med Inform. 2022 Apr 25;10(4):e35475. doi: 10.2196/35475.


DOI:10.2196/35475
PMID:35468085
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9086872/
Abstract

BACKGROUND: Lymph node metastasis (LNM) is critical for treatment decision making of patients with resectable non-small cell lung cancer, but it is difficult to precisely diagnose preoperatively. Electronic medical records (EMRs) contain a large volume of valuable information about LNM, but some key information is recorded in free text, which hinders its secondary use. OBJECTIVE: This study aims to develop LNM prediction models based on EMRs using natural language processing (NLP) and machine learning algorithms. METHODS: We developed a multiturn question answering NLP model to extract features about the primary tumor and lymph nodes from computed tomography (CT) reports. We then combined these features with other structured clinical characteristics to develop LNM prediction models using machine learning algorithms. We conducted extensive experiments to explore the effectiveness of the predictive models and compared them with size criteria based on CT image findings (the maximum short axis diameter of lymph node >10 mm was regarded as a metastatic node) and clinician's evaluation. Since the NLP model may extract features with mistakes, we also calculated the concordance correlation between the predicted probabilities of models using NLP-extracted features and gold standard features to explore the influence of NLP-driven automatic extraction. RESULTS: Experimental results show that the random forest models achieved the best performances with 0.792 area under the receiver operating characteristic curve (AUC) value and 0.456 average precision (AP) value for pN2 LNM prediction and 0.768 AUC value and 0.524 AP value for pN1&N2 LNM prediction. And all machine learning models outperformed the size criteria and clinician's evaluation. The concordance correlation between the random forest models using NLP-extracted features and gold standard features is 0.950 and improved to 0.984 when the top 5 important NLP-extracted features were replaced with gold standard features. CONCLUSIONS: The LNM models developed can achieve competitive performance using only limited EMR data such as CT reports and tumor markers in comparison with the clinician's evaluation. The multiturn question answering NLP model can extract features effectively to support the development of LNM prediction models, which may facilitate the clinical application of predictive models.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae9c/9086872/46abbf43d9c9/medinform_v10i4e35475_fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae9c/9086872/a12e6ab7aaf7/medinform_v10i4e35475_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae9c/9086872/db9602f1c556/medinform_v10i4e35475_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae9c/9086872/c463e5010653/medinform_v10i4e35475_fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae9c/9086872/46abbf43d9c9/medinform_v10i4e35475_fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae9c/9086872/a12e6ab7aaf7/medinform_v10i4e35475_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae9c/9086872/db9602f1c556/medinform_v10i4e35475_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae9c/9086872/c463e5010653/medinform_v10i4e35475_fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae9c/9086872/46abbf43d9c9/medinform_v10i4e35475_fig4.jpg

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Using Natural Language Processing and Machine Learning to Preoperatively Predict Lymph Node Metastasis for Non-Small Cell Lung Cancer With Electronic Medical Records: Development and Validation Study.

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引用本文的文献

[1]
Secondary use of health records for prediction, detection, and treatment planning in the clinical decision support system: a systematic review.

BMC Med Inform Decis Mak. 2025-5-16

[2]
Decoding Recurrence in Early-Stage and Locoregionally Advanced Non-Small Cell Lung Cancer: Insights From Electronic Health Records and Natural Language Processing.

JCO Clin Cancer Inform. 2025-4

[3]
Robust vs. Non-robust radiomic features: the quest for optimal machine learning models using phantom and clinical studies.

Cancer Imaging. 2025-3-12

[4]
Automated derivation of diagnostic criteria for lung cancer using natural language processing on electronic health records: a pilot study.

BMC Med Inform Decis Mak. 2024-12-4

[5]
Enhancing Thoracic Surgery with AI: A Review of Current Practices and Emerging Trends.

Curr Oncol. 2024-10-17

[6]
A scoping review of large language model based approaches for information extraction from radiology reports.

NPJ Digit Med. 2024-8-24

[7]
Detecting Ground Glass Opacity Features in Patients With Lung Cancer: Automated Extraction and Longitudinal Analysis via Deep Learning-Based Natural Language Processing.

JMIR AI. 2023-6-1

[8]
Automatic Detection of Distant Metastasis Mentions in Radiology Reports in Spanish.

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[9]
Deep learning predicts malignancy and metastasis of solid pulmonary nodules from CT scans.

Front Med (Lausanne). 2023-5-19

[10]
Deployment of Real-time Natural Language Processing and Deep Learning Clinical Decision Support in the Electronic Health Record: Pipeline Implementation for an Opioid Misuse Screener in Hospitalized Adults.

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本文引用的文献

[1]
Automatic Extraction of Lung Cancer Staging Information From Computed Tomography Reports: Deep Learning Approach.

JMIR Med Inform. 2021-7-21

[2]
Performance of a Machine Learning Algorithm Using Electronic Health Record Data to Identify and Estimate Survival in a Longitudinal Cohort of Patients With Lung Cancer.

JAMA Netw Open. 2021-7-1

[3]
Natural Language Processing to Identify Pulmonary Nodules and Extract Nodule Characteristics From Radiology Reports.

Chest. 2021-11

[4]
Extracting clinical terms from radiology reports with deep learning.

J Biomed Inform. 2021-4

[5]
A nomogram for predicting the risk of lymph node metastasis in T1-2 non-small-cell lung cancer based on PET/CT and clinical characteristics.

Transl Lung Cancer Res. 2021-1

[6]
Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries.

CA Cancer J Clin. 2021-5

[7]
Machine learning-based diagnostic method of pre-therapeutic F-FDG PET/CT for evaluating mediastinal lymph nodes in non-small cell lung cancer.

Eur Radiol. 2021-6

[8]
Predicting postoperative non-small cell lung cancer prognosis via long short-term relational regularization.

Artif Intell Med. 2020-7

[9]
Development of a nomogram for preoperative prediction of lymph node metastasis in non-small cell lung cancer: a SEER-based study.

J Thorac Dis. 2020-7

[10]
A cross-modal 3D deep learning for accurate lymph node metastasis prediction in clinical stage T1 lung adenocarcinoma.

Lung Cancer. 2020-7

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