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基于尿嘧啶-DNA 糖基化酶(UDG)逆转录环介导等温扩增(RT-LAMP)的 SARS-CoV-2 比色检测。

Colorimetric detection of SARS-CoV-2 by uracil-DNA glycosylase (UDG) reverse transcription loop-mediated isothermal amplification (RT-LAMP).

机构信息

Department of Parasitology, Faculty of Medicine, Universiti Malaya, 50603 Kuala Lumpur, Malaysia.

Department of Pathology, Hospital Sungai Buloh, Ministry of Health, Malaysia.

出版信息

Int J Infect Dis. 2022 Jul;120:132-134. doi: 10.1016/j.ijid.2022.04.036. Epub 2022 Apr 25.

DOI:10.1016/j.ijid.2022.04.036
PMID:35472524
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9035611/
Abstract

OBJECTIVES

Preventing reverse transcription loop-mediated isothermal amplification (RT-LAMP) carryover contamination could be solved by adding deoxyuridine triphosphate (dUTP) and uracil-DNA glycosylase (UDG) into the reaction master mix.

METHODS

RNA was extracted from nasopharyngeal swab samples by a simple RNA extraction method.

RESULTS

Testing of 77 samples demonstrated 91.2% sensitivity (95% confidence interval [CI]: 78-98.2%) and 100% specificity (95% confidence interval: 92-100%) using UDG RT-LAMP.

CONCLUSION

This colorimetric UDG RT-LAMP is a simple-to-use, fast, and easy-to-interpret method, which could serve as an alternative for diagnosis of SARS-CoV-2 infection, especially in remote hospitals and laboratories with under-equipped medical facilities.

摘要

目的

通过在反应主混合物中添加脱氧尿苷三磷酸(dUTP)和尿嘧啶-DNA 糖基化酶(UDG),可以解决逆转录环介导等温扩增(RT-LAMP)的携带污染问题。

方法

通过简单的 RNA 提取方法从鼻咽拭子样本中提取 RNA。

结果

使用 UDG RT-LAMP 对 77 个样本进行测试,灵敏度为 91.2%(95%置信区间[CI]:78-98.2%),特异性为 100%(95%置信区间:92-100%)。

结论

这种显色 UDG RT-LAMP 是一种简单易用、快速且易于解释的方法,可作为 SARS-CoV-2 感染诊断的替代方法,尤其是在医疗设施配备不足的偏远医院和实验室。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c39f/9035611/159e46746f3d/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c39f/9035611/159e46746f3d/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c39f/9035611/159e46746f3d/gr1_lrg.jpg

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