Mitzscherling Julia, MacLean Joana, Lipus Daniel, Bartholomäus Alexander, Mangelsdorf Kai, Lipski André, Roddatis Vladimir, Liebner Susanne, Wagner Dirk
GFZ German Research Centre for Geosciences, Section Geomicrobiology, Potsdam, Germany.
GFZ German Research Centre for Geosciences, Section Organic Geochemistry, Potsdam, Germany.
Int J Syst Evol Microbiol. 2022 Apr;72(4). doi: 10.1099/ijsem.0.005319.
Strain NGK65, a novel hexadecane degrading, non-motile, Gram-positive, rod-to-coccus shaped, aerobic bacterium, was isolated from plastic polluted soil sampled at a landfill. Strain NGK65 hydrolysed casein, gelatin, urea and was catalase-positive. It optimally grew at 28 °C, in 0-1% NaCl and at pH 7.5-8.0. Glycerol, d-glucose, arbutin, aesculin, salicin, potassium 5-ketogluconate, sucrose, acetate, pyruvate and hexadecane were used as sole carbon sources. The predominant membrane fatty acids were iso-C followed by iso-C and C 9. The major polar lipids were phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and hydroxyphosphatidylinositol. The cell-wall peptidoglycan type was A3γ, with ll-diaminopimelic acid and glycine as the diagnostic amino acids. MK 8 (H) was the predominant menaquinone. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain NGK65 belongs to the genus (phylum ), appearing most closely related to MJ31 (98.6%) and KSL-104 (98.3%). The genomic DNA G+C content of strain NGK65 was 68.2%. Strain NGK65 and the type strains of species involved in the analysis had average nucleotide identity values of 78.3-71.9% as well as digital DNA-DNA hybridization values between 22.5 and 19.7%, which clearly indicated that the isolate represents a novel species within the genus . Based on phenotypic and molecular characterization, strain NGK65 can clearly be differentiated from its phylogenetic neighbours to establish a novel species, for which the name sp. nov. is proposed. The type strain is NGK65 (=DSM 113112=NCCB 100846).
菌株NGK65是一种从垃圾填埋场采集的受塑料污染土壤中分离出的新型十六烷降解菌,无运动性,革兰氏阳性,呈杆状至球菌状,好氧。菌株NGK65能水解酪蛋白、明胶、尿素,过氧化氢酶呈阳性。它在28℃、0 - 1%氯化钠以及pH 7.5 - 8.0条件下生长最佳。甘油、d - 葡萄糖、熊果苷、七叶苷、水杨苷、5 - 酮葡萄糖酸钾、蔗糖、乙酸盐、丙酮酸盐和十六烷用作唯一碳源。主要的膜脂肪酸是异C,其次是异C和C9。主要的极性脂质是磷脂酰甘油、磷脂酰乙醇胺、磷脂酰肌醇和羟基磷脂酰肌醇。细胞壁肽聚糖类型为A3γ,以ll - 二氨基庚二酸和甘氨酸作为诊断性氨基酸。MK 8 (H)是主要的甲基萘醌。基于16S rRNA基因序列的系统发育分析表明,菌株NGK65属于(门)属,与MJ31(98.6%)和KSL - 104(98.3%)关系最为密切。菌株NGK65的基因组DNA G + C含量为68.2%。菌株NGK65与分析中涉及的相关模式菌株的平均核苷酸同一性值为78.3 - 71.9%,数字DNA - DNA杂交值在22.5至19.7%之间,这清楚地表明该分离物代表属内的一个新物种。基于表型和分子特征,菌株NGK65可明显与其系统发育邻种区分开来,从而建立一个新物种,为此提议命名为sp. nov.。模式菌株是NGK65(=DSM 113112=NCCB 100846)。