Lim Jun-Muk, Kim Soo-Jin, Hamada Moriyuki, Ahn Jae-Hyung, Weon Hang-Yeon, Suzuki Ken-Ichiro, Ahn Tae-Young, Kwon Soon-Wo
Department of Microbiology, Dankook University, Anseo-dong, Cheonan 330-714, Republic of Korea.
Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration, Suwon, Republic of Korea.
Int J Syst Evol Microbiol. 2014 Dec;64(Pt 12):4109-4114. doi: 10.1099/ijs.0.063610-0. Epub 2014 Sep 23.
Strain KIS2-16(T) was isolated from a soil sample collected from Daecheong Island of Incheon region, South Korea. KIS2-16(T) was Gram-staining-positive, aerobic, non-spore-forming, non-motile, catalase-positive, oxidase-negative and mesophilic. On the basis of 16S rRNA gene sequence analysis, strain KIS2-16(T) represented a member of the genus Nocardioides, being most closely related to the type strains of species of the genus Nocardioides, Nocardioides maradonensis RP-B30(T) (97.8 % sequence similarity) and Nocardioides ultimimeridianus RP-B26(T) (97.0 %). The fatty acid profile of KIS2-16(T) was dominated by C18 : 1ω9c, C17 : 1ω8c, C16 : 0, C18 : 0 10-methyl (TBSA), C16 : 0 2-OH and C17 : 0 2-OH. The major isoprenoid quinone was MK-8(H4), and the major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol. The peptidoglycan structure was A3γ-type with ll-diaminopimelic acid. The genomic DNA G+C content of KIS2-16(T) was 64.9 mol%. Strain KIS2-16(T) showed DNA-DNA hybridization values of less than 70 % with the closely related species of the genus Nocardioides. Based on phenotypic, genotypic and phylogenetic data, the isolate represents a novel species of the genus Nocardioides, for which the name Nocardioides daecheongensis sp. nov. (type strain KIS2-16(T) = DSM 27136(T) = KACC 17297(T) = NBRC 109597(T)) is proposed.
菌株KIS2-16(T)是从韩国仁川地区大青岛采集的土壤样本中分离得到的。KIS2-16(T)革兰氏染色阳性,好氧,不形成芽孢,无运动性,过氧化氢酶阳性,氧化酶阴性,为嗜温菌。基于16S rRNA基因序列分析,菌株KIS2-16(T)属于诺卡氏菌属,与诺卡氏菌属物种的模式菌株马拉多诺诺卡氏菌RP-B30(T)(序列相似性97.8%)和极昼诺卡氏菌RP-B26(T)(序列相似性97.0%)关系最为密切。KIS2-16(T)的脂肪酸谱以C18 : 1ω9c、C17 : 1ω8c、C16 : 0、C18 : 0 10-甲基(TBSA)、C16 : 0 2-OH和C17 : 0 2-OH为主。主要类异戊二烯醌为MK-8(H4),主要极性脂为双磷脂酰甘油、磷脂酰甘油和磷脂酰肌醇。肽聚糖结构为含ll-二氨基庚二酸的A3γ型。KIS2-16(T)的基因组DNA G+C含量为64.9 mol%。菌株KIS2-16(T)与诺卡氏菌属密切相关物种的DNA-DNA杂交值低于70%。基于表型、基因型和系统发育数据,该分离株代表诺卡氏菌属的一个新物种,为此提出新名称大青岛诺卡氏菌(Nocardioides daecheongensis sp. nov.)(模式菌株KIS2-16(T) = DSM 27136(T) = KACC 17297(T) = NBRC 109597(T))。