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棘胸鮡属(Doradidae,Astrodoradinae)鱼类的核型进化:结构重排和重复 DNA 剧烈重组介导的过程

Karyotype Evolution of Talking Thorny Catfishes Anadoras (Doradidae, Astrodoradinae): A Process Mediated by Structural Rearrangements and Intense Reorganization of Repetitive DNAs.

机构信息

Laboratory of Animal Cytogenetics, Department of General Biology, CCB, State University of Londrina, Londrina, Brazil.

Cytogenetic Laboratory, Center of Biological and Health Sciences, State University of Western Paraná, Cascavel, Brazil.

出版信息

Cytogenet Genome Res. 2022;162(1-2):64-75. doi: 10.1159/000523747. Epub 2022 May 2.

DOI:10.1159/000523747
PMID:35500552
Abstract

Anadoras is a thorny catfish genus widespread through the Amazon and Paraguay river basins. It includes 2 nominal species, A. grypus and A. weddellii, plus Anadoras sp. "araguaia," an undescribed species only recognized morphologically. Since Anadoras occupies a basal position within the Astrodoradinae phylogeny, it is crucial to identify its cytogenetic features to comprehend the mechanisms involved in the chromosomal diversification of this subfamily. Therefore, we performed a comparative cytogenetic analysis including all species of Anadoras. Furthermore, we applied a species delimitation analysis based on 600 bp of the mitochondrial cytochrome oxidase subunit 1 (CO1) gene to investigate the taxonomic status of the species. Cytogenetic markers revealed a high degree of similarity among Anadoras weddellii and Anadoras sp. "araguaia," both have 2n = 56 chromosomes (24m + 10sm + 22st/a), single NOR sites on acrocentric pair 28, and 5S rDNA sites on submetacentric pair 15. A. grypus has the most divergent chromosomal characteristics because, even though it also has 2n = 56 chromosomes, it exhibits several differences in the chromosome formula, heterochromatin distribution, and number/position of the rDNA sites. In sum, we believe that the chromosome diversification of Anadoras is due to 4 mechanisms: centric fusion, pericentric/paracentric inversions, nonreciprocal translocations, and activity of transposable elements. Additionally, our phylogenetic tree revealed well-supported clades and, by barcode species delimitation analysis, confirmed the existence of 3 molecular operational taxonomic units, including the putative new species Anadoras sp. "araguaia."

摘要

阿那多拉斯是一种多刺的鲶鱼属,广泛分布于亚马逊和巴拉圭河流域。它包括 2 个指名种,A. grypus 和 A. weddellii,以及形态上被识别但尚未描述的 Anadoras sp. "araguaia"。由于阿那多拉斯在 Astrodoradinae 系统发育中处于基础位置,因此确定其细胞遗传学特征对于理解该亚科染色体多样化的机制至关重要。因此,我们对包括所有阿那多拉斯种在内的物种进行了比较细胞遗传学分析。此外,我们应用了基于线粒体细胞色素氧化酶亚基 1(CO1)基因 600 bp 的物种界定分析,以调查物种的分类地位。细胞遗传学标记显示阿那多拉斯 weddellii 和 Anadoras sp. "araguaia"之间具有高度相似性,它们都具有 2n = 56 条染色体(24m + 10sm + 22st/a),在近端着丝粒对 28 上有单个 NOR 位点,在亚中部对 15 上有 5S rDNA 位点。A. grypus 具有最具分歧的染色体特征,因为尽管它也具有 2n = 56 条染色体,但在染色体公式、异染色质分布和 rDNA 位点的数量/位置方面存在几个差异。总之,我们认为阿那多拉斯的染色体多样化是由于 4 种机制:着丝粒融合、着丝粒/近着丝粒倒位、非相互易位和转座元件的活性。此外,我们的系统发育树揭示了支持良好的分支,并且通过条码物种界定分析,确认了存在 3 个分子操作分类单元,包括假定的新种 Anadoras sp. "araguaia"。

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