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高镜像攻击和低镜像攻击斑马鱼行为的转录组学基础

Transcriptomic underpinnings of high and low mirror aggression zebrafish behaviours.

作者信息

Reichmann Florian, Pilic Johannes, Trajanoski Slave, Norton William H J

机构信息

Division of Pharmacology, Otto Loewi Research Center, Medical University of Graz, Graz, Austria.

Center for Medical Research, Medical University of Graz, Graz, Austria.

出版信息

BMC Biol. 2022 May 2;20(1):97. doi: 10.1186/s12915-022-01298-z.

Abstract

BACKGROUND

Aggression is an adaptive behaviour that animals use to protect offspring, defend themselves and obtain resources. Zebrafish, like many other animals, are not able to recognize themselves in the mirror and typically respond to their own reflection with aggression. However, mirror aggression is not an all-or-nothing phenomenon, with some individuals displaying high levels of aggression against their mirror image, while others show none at all. In the current work, we have investigated the genetic basis of mirror aggression by using a classic forward genetics approach - selective breeding for high and low mirror aggression zebrafish (HAZ and LAZ).

RESULTS

We characterized AB wild-type zebrafish for their response to the mirror image. Both aggressive and non-aggressive fish were inbred over several generations. We found that HAZ were on average more aggressive than the corresponding LAZ across generations and that the most aggressive adult HAZ were less anxious than the least aggressive adult LAZ after prolonged selective breeding. RNAseq analysis of these fish revealed that hundreds of protein-encoding genes with important diverse biological functions such as arsenic metabolism (as3mt), cell migration (arl4ab), immune system activity (ptgr1), actin cytoskeletal remodelling (wdr1), corticogenesis (dgcr2), protein dephosphorylation (ublcp1), sialic acid metabolism (st6galnac3) and ketone body metabolism (aacs) were differentially expressed between HAZ and LAZ, suggesting a strong genetic contribution to this phenotype. DAVID pathway analysis showed that a number of diverse pathways are enriched in HAZ over LAZ including pathways related to immune function, oxidation-reduction processes and cell signalling. In addition, weighted gene co-expression network analysis (WGCNA) identified 12 modules of highly correlated genes that were significantly associated with aggression duration and/or experimental group.

CONCLUSIONS

The current study shows that selective breeding based of the mirror aggression phenotype induces strong, heritable changes in behaviour and gene expression within the brain of zebrafish suggesting a strong genetic basis for this behaviour. Our transcriptomic analysis of fish selectively bred for high and low levels of mirror aggression revealed specific transcriptomic signatures induced by selective breeding and mirror aggression and thus provides a large and novel resource of candidate genes for future study.

摘要

背景

攻击行为是动物用于保护后代、自我防御和获取资源的一种适应性行为。斑马鱼和许多其他动物一样,无法在镜子中认出自己,通常会对自己的镜像产生攻击性反应。然而,镜像攻击并非全有或全无的现象,一些个体对自己的镜像表现出高度攻击性,而另一些个体则完全没有攻击性。在当前的研究中,我们采用经典的正向遗传学方法——对高镜像攻击性和低镜像攻击性的斑马鱼(HAZ和LAZ)进行选择性育种,来研究镜像攻击的遗传基础。

结果

我们对AB野生型斑马鱼对镜像的反应进行了表征。攻击性和非攻击性的鱼都经过了几代近交。我们发现,经过长时间的选择性育种,HAZ在各代中平均比相应的LAZ更具攻击性,且最具攻击性的成年HAZ比最不具攻击性的成年LAZ焦虑程度更低。对这些鱼的RNAseq分析表明,数百个具有重要多样生物学功能的蛋白质编码基因,如砷代谢(as3mt)、细胞迁移(arl4ab)、免疫系统活性(ptgr1)、肌动蛋白细胞骨架重塑(wdr1)、皮质发生(dgcr2)、蛋白质去磷酸化(ublcp1)、唾液酸代谢(st6galnac3)和酮体代谢(aacs),在HAZ和LAZ之间存在差异表达,这表明该表型有很强的遗传贡献。DAVID通路分析表明,与LAZ相比,HAZ中富集了许多不同的通路,包括与免疫功能、氧化还原过程和细胞信号传导相关的通路。此外,加权基因共表达网络分析(WGCNA)确定了12个高度相关基因模块,这些模块与攻击持续时间和/或实验组显著相关。

结论

当前研究表明,基于镜像攻击表型的选择性育种会在斑马鱼大脑中诱导行为和基因表达的强烈、可遗传变化,这表明该行为有很强的遗传基础。我们对高、低水平镜像攻击选择性育种的鱼类进行的转录组分析揭示了选择性育种和镜像攻击诱导的特定转录组特征,从而为未来研究提供了大量全新的候选基因资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a06/9059464/d780e17f0b5a/12915_2022_1298_Fig1_HTML.jpg

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