Biophysics Department, Faculty of Sciences, Cairo University, Giza, 12613, Egypt.
Future Microbiol. 2022 Jul;17:755-762. doi: 10.2217/fmb-2022-0083. Epub 2022 May 5.
During the past few months, mucormycosis has been associated with SARS-CoV-2 infections. Molecular docking combined with molecular dynamics simulation is utilized to test nucleotide-based inhibitors against the RdRps of SARS-CoV-2 solved structure and RdRp model built . The results reveal a comparable binding affinity of sofosbuvir, galidesivir, ribavirin and remdesivir compared with the physiological nucleotide triphosphates against RdRp as well as the SARS-CoV-2 RdRp as reported before. Additionally, other compounds such as setrobuvir, YAK, IDX-184 and modified GTP compounds 2, 3 and 4 show potential calculated average binding affinities against RdRp. The present study suggests the dual inhibition potential of the recommended drugs and compounds against SARS-CoV-2 and RdRps.
在过去的几个月中,毛霉病与 SARS-CoV-2 感染有关。利用分子对接结合分子动力学模拟来测试针对 SARS-CoV-2 已解决结构和 RdRp 模型构建的 RdRp 的基于核苷酸的抑制剂。结果表明,与生理核苷酸三磷酸类似,索非布韦、加利巴韦林、利巴韦林和瑞德西韦对 RdRp 以及之前报道的 SARS-CoV-2 RdRp 的结合亲和力相当。此外,其他化合物,如索非布韦、YAK、IDX-184 和修饰的 GTP 化合物 2、3 和 4,对 RdRp 显示出潜在的计算平均结合亲和力。本研究表明,推荐药物和化合物对 SARS-CoV-2 和 RdRp 具有双重抑制潜力。