Tayfuroglu Omer, Kocak Abdulkadir, Zorlu Yunus
Department of Chemistry, Gebze Technical University, 41400 Gebze, Kocaeli, Turkey.
Phys Chem Chem Phys. 2022 May 18;24(19):11882-11897. doi: 10.1039/d1cp05973d.
Metal-organic frameworks (MOFs) with their exceptional porous and organized structures have been the subject of numerous applications. Predicting the bulk properties from atomistic simulations requires the most accurate force fields, which is still a major problem due to MOFs' hybrid structures governed by covalent, ionic and dispersion forces. Application of molecular dynamics to such large periodic systems is thus beyond the current computational power. Therefore, alternative strategies must be developed to reduce computational cost without losing reliability. In this work, we construct a generic neural network potential (NNP) for the isoreticular metal-organic framework (IRMOF) series trained by PBE-D4/def2-TZVP reference data of MOF fragments. We confirmed the success of the resulting NNP on both fragments and bulk MOF structures by prediction of properties such as equilibrium lattice constants, phonon density of states and linker orientation. The RMSE values of energy and force for the fragments are only 0.0017 eV atom and 0.15 eV Å, respectively. The NNP predicted equilibrium lattice constants of bulk structures, even though not included in training, are off by only 0.2-2.4% from experimental results. Moreover, our fragment based NNP successfully predicts the phenylene ring torsional energy barrier, equilibrium bond distances and vibrational density of states of bulk MOFs. Furthermore, the NNP enables revealing the odd behaviors of selected MOFs such as the dual thermal expansion properties and the effect of mechanical strain on the adsorption of hydrogen and methane molecules. The NNP based molecular dynamics (MD) simulations suggest IRMOF-4 and IRMOF-7 to have positive-to-negative thermal expansion coefficients while the rest to have only negative thermal expansion at the studied temperatures of 200 K to 400 K. The deformation of the bulk structure by reduction of the unit cell volume has been shown to increase the volumetric methane uptake in IRMOF-1 but decrease the volumetric methane uptake in IRMOF-7 due to the steric hindrance. To the best of our knowledge, this study presents the first pre-trained model publicly available giving the opportunity for the researchers in the field to investigate different aspects of IRMOFs by performing large-scale simulation at the first-principles level of accuracy.
金属有机框架材料(MOFs)因其独特的多孔和有序结构而成为众多应用的研究对象。从原子模拟预测其整体性质需要最精确的力场,但由于MOFs的混合结构受共价力、离子力和色散力支配,这仍然是一个主要问题。因此,将分子动力学应用于如此大的周期性系统超出了当前的计算能力。所以,必须开发替代策略以降低计算成本同时不损失可靠性。在这项工作中,我们基于MOF片段的PBE-D4/def2-TZVP参考数据构建了一个用于同构金属有机框架(IRMOF)系列的通用神经网络势(NNP)。我们通过预测平衡晶格常数、声子态密度和连接体取向等性质,证实了所得NNP在片段和整体MOF结构上的成功。片段的能量和力的均方根误差(RMSE)值分别仅为0.0017 eV/原子和0.15 eV/Å。NNP预测的整体结构平衡晶格常数,尽管未包含在训练中,但与实验结果的偏差仅为0.2 - 2.4%。此外,我们基于片段的NNP成功预测了整体MOFs的亚苯基环扭转能垒、平衡键长和振动态密度。此外,NNP能够揭示所选MOFs的奇特行为,如双重热膨胀性质以及机械应变对氢气和甲烷分子吸附的影响。基于NNP的分子动力学(MD)模拟表明,在200 K至400 K的研究温度下,IRMOF - 4和IRMOF - 7具有从正到负的热膨胀系数,而其余的仅具有负热膨胀。已表明通过减小晶胞体积使整体结构变形会增加IRMOF - 1中的甲烷体积吸收量,但由于空间位阻会降低IRMOF - 7中的甲烷体积吸收量。据我们所知,本研究提出了第一个公开可用的预训练模型,为该领域的研究人员提供了通过在第一性原理精度水平上进行大规模模拟来研究IRMOFs不同方面的机会。