Suppr超能文献

通过分子动力学研究洞察月桂酸聚乙二醇酯在水和醇中的结构特性。

Insight into structural properties of polyethylene glycol monolaurate in water and alcohols from molecular dynamics studies.

作者信息

Khoiroh Ianatul, Lee Sze Ying, Pirdashti Mohsen, Lee Ming-Jer

机构信息

Department of Chemical & Environmental Engineering, Faculty of Science and Engineering, University of Nottingham Malaysia Jalan Broga 43500 Semenyih Selangor Darul Ehsan Malaysia

Department of Chemical Engineering, Faculty of Engineering and Science, Universiti Tunku Abdul Rahman Sungai Long Campus Kajang 43000 Selangor Malaysia.

出版信息

RSC Adv. 2020 Jun 8;10(37):21760-21771. doi: 10.1039/c9ra09688d.

Abstract

By means of molecular dynamics (MD) simulations, we explored the structural properties of polyethylene glycol monolaurate (PEGML) in water and in various aliphatic alcohols (methanol, ethanol, 2-propanol, 2-butanol, -butanol, and 1-pentanol). The PEGML and the alcohols were simulated using the optimized potentials for liquid simulations, all-atom (OPLS-AA) force field and water using the extended simple point charge (SPC/E) model. From the isothermal-isobaric (, constant number of particles, constant pressure, and constant temperature) ensemble, we extracted the densities from the simulations and compared them with those from experimental results in order to confirm the validity of the selected force fields. The densities from MD simulations are in good agreement with the experimental values. To gain more insight into the nature of interactions between the PEGML and the solvent molecules, we analyzed the hydrogen-bonds, the electrostatic (Coulomb) interactions, and the van der Waals (Lennard-Jones) interaction energies extracted from MD simulations. The results were further strengthened by computing the solvation free energy by employing the free energy perturbation (FEP) approach. In this method, the free energy difference was computed by using the Bennet Acceptance Ratio (BAR) method. Moreover, the radial distribution functions were analyzed in order to gain more understanding of the solution behavior at the molecular level.

摘要

通过分子动力学(MD)模拟,我们探究了月桂酸聚乙二醇酯(PEGML)在水以及各种脂肪醇(甲醇、乙醇、2-丙醇、2-丁醇、正丁醇和1-戊醇)中的结构性质。使用液体模拟优化势全原子(OPLS-AA)力场对PEGML和醇进行模拟,使用扩展简单点电荷(SPC/E)模型对水进行模拟。从等温等压(,粒子数恒定、压力恒定和温度恒定)系综中,我们从模拟中提取密度,并将其与实验结果中的密度进行比较,以确认所选力场的有效性。MD模拟得到的密度与实验值吻合良好。为了更深入了解PEGML与溶剂分子之间相互作用的本质,我们分析了从MD模拟中提取的氢键、静电(库仑)相互作用和范德华(伦纳德-琼斯)相互作用能。通过采用自由能微扰(FEP)方法计算溶剂化自由能,进一步强化了结果。在该方法中,使用贝内特接受率(BAR)方法计算自由能差。此外,分析了径向分布函数,以便在分子水平上更深入地了解溶液行为。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b3ee/9054503/8c2ff39a9bc6/c9ra09688d-f1.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验