Ecology and Biodiversity group, Institute of Environmental Biology, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands.
UMR 6553 Ecobio, CNRS, University of Rennes, Avenue du Général Leclerc, 35042, Rennes Cedex, France.
FEMS Microbiol Ecol. 2022 May 23;98(6). doi: 10.1093/femsec/fiac057.
Predatory protists are major consumers of soil micro-organisms. By selectively feeding on their prey, they can shape soil microbiome composition and functions. While different protists are known to show diverging impacts, it remains impossible to predict a priori the effect of a given species. Various protist traits including phylogenetic distance, growth rate and volume have been previously linked to the predatory impact of protists. Closely related protists, however, also showed distinct prey choices which could mirror specificity in their dietary niche. We, therefore, aimed to estimate the dietary niche breadth and overlap of eight protist isolates on 20 bacterial species in plate assays. To assess the informative value of previously suggested and newly proposed (feeding-related) protist traits, we related them to the impacts of predation of each protist on a protist-free soil bacterial community in a soil microcosm via 16S rRNA gene amplicon sequencing. We could demonstrate that each protist showed a distinct feeding pattern in vitro. Further, the assayed protist feeding patterns and growth rates correlated well with the observed predatory impacts on the structure of soil bacterial communities. We thus conclude that in vitro screening has the potential to inform on the specific predatory impact of selected protists.
捕食性原生动物是土壤微生物的主要消费者。通过有选择地捕食猎物,它们可以塑造土壤微生物组的组成和功能。虽然已知不同的原生动物会产生不同的影响,但仍然不可能预先预测给定物种的影响。以前已经将各种原生动物特征(包括系统发育距离、增长率和体积)与原生动物的捕食影响联系起来。然而,密切相关的原生动物也表现出不同的猎物选择,这可能反映了它们在饮食生态位上的特异性。因此,我们旨在通过平板测定法来估计 8 个原生动物分离物对 20 种细菌的饮食生态位广度和重叠。为了评估先前提出的和新提出的(与摄食有关的)原生动物特征的信息价值,我们将它们与在土壤微宇宙中通过 16S rRNA 基因扩增子测序对无原生动物土壤细菌群落的捕食影响相关联。我们可以证明每个原生动物在体外都表现出独特的摄食模式。此外,所测定的原生动物摄食模式和生长率与观察到的对土壤细菌群落结构的捕食影响很好地相关。因此,我们得出结论,体外筛选有可能为选定原生动物的特定捕食影响提供信息。