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酸性介质中玉米赤霉烯酮内酯酶增强解毒活性的计算设计

Computational design of enhanced detoxification activity of a zearalenone lactonase from in acidic medium.

作者信息

Lin Min, Tan Jian, Xu Zhaobin, Huang Jin, Tian Ye, Chen Bo, Wu Yandong, Tong Yi, Zhu Yushan

机构信息

Department of Chemical Engineering, Tsinghua University Beijing 100084 China

Nutrition & Health Research Institute, China National Cereals, Oils and Foodstuffs Corporation (COFCO) Beijing 102209 China.

出版信息

RSC Adv. 2019 Oct 2;9(54):31284-31295. doi: 10.1039/c9ra04964a. eCollection 2019 Oct 1.

Abstract

Computational design of pH-activity profiles for enzymes is of great importance in industrial applications. In this research, a computational strategy was developed to engineer the pH-activity profile of a zearalenone lactonase (ZHD101) from to promote its activity in acidic medium. The active site p values of ZHD101 were computationally designed by introducing positively charged lysine mutations on the enzyme surface, and the experimental results showed that two variants, M2(D157K) and M9(E171K), increased the catalytic efficiencies of ZHD101 modestly under acidic conditions. Moreover, two variants, M8(D133K) and M9(E171K), were shown to increase the turnover numbers by 2.73 and 2.06-fold with respect to wild type, respectively, though their apparent Michaelis constants were concomitantly increased. These results imply that the active site p value change might affect the pH-activity profile of the enzyme. Our computational strategy for pH-activity profile engineering considers protein stability; therefore, limited experimental validation is needed to discover beneficial mutations under shifted pH conditions.

摘要

酶的pH活性曲线的计算设计在工业应用中具有重要意义。在本研究中,开发了一种计算策略来改造来自[具体来源未给出]的玉米赤霉烯酮内酯酶(ZHD101)的pH活性曲线,以提高其在酸性介质中的活性。通过在酶表面引入带正电荷的赖氨酸突变,对ZHD101的活性位点pKa值进行了计算设计,实验结果表明,两个变体M2(D157K)和M9(E171K)在酸性条件下适度提高了ZHD101的催化效率。此外,两个变体M8(D133K)和M9(E171K)相对于野生型分别使周转数增加了2.73倍和2.06倍,尽管它们的表观米氏常数也相应增加。这些结果表明活性位点pKa值的变化可能会影响酶的pH活性曲线。我们用于pH活性曲线工程的计算策略考虑了蛋白质稳定性;因此,在pH条件改变的情况下,发现有益突变所需的实验验证有限。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/117f/9072336/4a2f87f13fe1/c9ra04964a-f1.jpg

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