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利用基因组预测检测数量性状的微观进化变化。

Using genomic prediction to detect microevolutionary change of a quantitative trait.

机构信息

School of Biosciences, University of Sheffield, Sheffield S10 2TN, UK.

School of Biology, University of St Andrews, St Andrews KY16 9ST, UK.

出版信息

Proc Biol Sci. 2022 May 11;289(1974):20220330. doi: 10.1098/rspb.2022.0330.

Abstract

Detecting microevolutionary responses to natural selection by observing temporal changes in individual breeding values is challenging. The collection of suitable datasets can take many years and disentangling the contributions of the environment and genetics to phenotypic change is not trivial. Furthermore, pedigree-based methods of obtaining individual breeding values have known biases. Here, we apply a genomic prediction approach to estimate breeding values of adult weight in a 35-year dataset of Soay sheep (. Comparisons are made with a traditional pedigree-based approach. During the study period, adult body weight decreased, but the underlying genetic component of body weight increased, at a rate that is unlikely to be attributable to genetic drift. Thus cryptic microevolution of greater adult body weight has probably occurred. Genomic and pedigree-based approaches gave largely consistent results. Thus, using genomic prediction to study microevolution in wild populations can remove the requirement for pedigree data, potentially opening up new study systems for similar research.

摘要

通过观察个体繁殖值的时间变化来检测对自然选择的微进化反应具有挑战性。收集合适的数据集可能需要多年时间,而且将环境和遗传对表型变化的贡献分开并不简单。此外,基于系谱的个体繁殖值获取方法存在已知的偏差。在这里,我们应用基因组预测方法来估计 35 年的设得兰绵羊(Soay sheep)成年体重数据集的繁殖值。与传统的基于系谱的方法进行了比较。在研究期间,成年体重下降,但体重的遗传组成增加,其速度不太可能归因于遗传漂变。因此,可能发生了更大成年体重的隐性微进化。基因组和系谱方法给出的结果基本一致。因此,使用基因组预测来研究野生种群中的微进化可以消除对系谱数据的需求,可能为类似研究开辟新的研究系统。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bce3/9091855/16cd20cf3d6e/rspb20220330f01.jpg

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