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[环境变化对叶片光合作用和氮代谢响应的转录组分析]

[Transcriptome analysis on responses of leaf photosynthesis and nitrogen metabolism of to environmental change].

作者信息

Liu Mei-Shuo, Wang Chuan-Kuan, Quan Xian-Kui

机构信息

Center for Ecological Research, Northeast Forestry University, Harbin 150040, China.

出版信息

Ying Yong Sheng Tai Xue Bao. 2022 Apr;33(4):957-962. doi: 10.13287/j.1001-9332.202203.008.

DOI:10.13287/j.1001-9332.202203.008
PMID:35543047
Abstract

To reveal molecular mechanisms underlying photosynthesis responses of Dahurian larch () to environmental changes, we used the high-throughput sequencing technology to sequence the transcriptome of larch leaves from four latitudinal sites with different environmental conditions, and compared differential expression genes (DEGs). The four sites from high- to low-latitude were Tahe (52°52' N), Songling (50°72' N), Heihe (49°22' N), and Dailing (47°08' N). A total of 282428811 clean reads were sequenced out, among which the abundace of DEGs were 16915, 18812, 28536, 20635, 29957 and 23617 for the Tahe-Songling, Tahe-Heihe, Tahe-Dailing, Songling-Heihe, Songling-Dailing, and Heihe-Dailing comparisons, respectively. The expression of nine genes family (, , , , , , , 27, and 28) encoding Photosystem Ⅱ and that of three genes (1,, 1, , and 1, ) encoding F-type ATPase, which were involved in photosynthesis pathway, were significantly up-regulated with increasing environmental differences among the sites. A similar up-regulation pattern occurred for the expression of genes encoding glutamine synthetase (, ), nitrate reductase (), and carbonic anhydrase (, ) that were involved in nitrogen metabolism pathway. The numbers of DEGs and up-regulated genes increased with the increases in environmental changes among the sites, resulting in inter-site divergence of photosynthetic capacity of larch trees.

摘要

为揭示兴安落叶松光合作用对环境变化响应的分子机制,我们利用高通量测序技术对来自四个具有不同环境条件的纬度地点的落叶松叶片转录组进行测序,并比较差异表达基因(DEG)。从高纬度到低纬度的四个地点分别是塔河(北纬52°52′)、松岭(北纬50°72′)、黑河(北纬49°22′)和带岭(北纬47°08′)。共测序得到282428811条clean reads,其中塔河 - 松岭、塔河 - 黑河、塔河 - 带岭、松岭 - 黑河、松岭 - 带岭和黑河 - 带岭比较的DEG丰度分别为16915、18812、28536、20635、29957和23617。参与光合作用途径的编码光系统Ⅱ的九个基因家族(、、、、、、、27和28)以及编码F型ATP酶的三个基因(1、、1、和1、)的表达随着各地点间环境差异的增加而显著上调。参与氮代谢途径的编码谷氨酰胺合成酶(、)、硝酸还原酶()和碳酸酐酶(、)的基因表达也出现类似的上调模式。随着各地点间环境变化的增加,DEG和上调基因的数量增加,导致落叶松光合能力的位点间差异。

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