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37例偏侧性缺陷病例队列中的基因变异谱

Spectrum of Genetic Variants in a Cohort of 37 Laterality Defect Cases.

作者信息

Antony Dinu, Gulec Yilmaz Elif, Gezdirici Alper, Slagter Lennart, Bakey Zeineb, Bornaun Helen, Tanidir Ibrahim Cansaran, Van Dinh Tran, Brunner Han G, Walentek Peter, Arnold Sebastian J, Backofen Rolf, Schmidts Miriam

机构信息

Genome Research Division, Human Genetics Department, Radboud University Medical Center and Radboud Institute for Molecular Life Sciences, Nijmegen, Netherlands.

Center for Pediatrics and Adolescent Medicine, University Hospital Freiburg, Faculty of Medicine, Freiburg, Germany.

出版信息

Front Genet. 2022 Apr 13;13:861236. doi: 10.3389/fgene.2022.861236. eCollection 2022.

Abstract

Laterality defects are defined by the perturbed left-right arrangement of organs in the body, occurring in a syndromal or isolated fashion. In humans, primary ciliary dyskinesia (PCD) is a frequent underlying condition of defective left-right patterning, where ciliary motility defects also result in reduced airway clearance, frequent respiratory infections, and infertility. Non-motile cilia dysfunction and dysfunction of non-ciliary genes can also result in disturbances of the left-right body axis. Despite long-lasting genetic research, identification of gene mutations responsible for left-right patterning has remained surprisingly low. Here, we used whole-exome sequencing with Copy Number Variation (CNV) analysis to delineate the underlying molecular cause in 35 mainly consanguineous families with laterality defects. We identified causative gene variants in 14 families with a majority of mutations detected in genes previously associated with PCD, including two small homozygous CNVs. None of the patients were previously clinically diagnosed with PCD, underlining the importance of genetic diagnostics for PCD diagnosis and adequate clinical management. Identified variants in non-PCD-associated genes included variants in and , suggesting that dysfunction of these genes results in laterality defects in humans. Furthermore, we detected candidate variants in and possibly associated with situs inversus. The low mutation detection rate of this study, in line with other previously published studies, points toward the possibility of non-coding genetic variants, putative genetic mosaicism, epigenetic, or environmental effects promoting laterality defects.

摘要

左右侧缺陷是由体内器官左右排列紊乱所定义的,以综合征或孤立的形式出现。在人类中,原发性纤毛运动障碍(PCD)是左右模式缺陷的常见潜在病因,其中纤毛运动缺陷还会导致气道清除能力下降、频繁的呼吸道感染和不孕。非运动性纤毛功能障碍和非纤毛基因功能障碍也会导致左右体轴的紊乱。尽管进行了长期的基因研究,但负责左右模式形成的基因突变的识别率仍然出奇地低。在这里,我们使用全外显子测序结合拷贝数变异(CNV)分析,来确定35个主要为近亲家庭中左右侧缺陷的潜在分子原因。我们在14个家庭中鉴定出了致病基因变异,其中大多数突变在先前与PCD相关的基因中检测到,包括两个小的纯合CNV。这些患者之前均未被临床诊断为PCD,这凸显了基因诊断对PCD诊断和适当临床管理的重要性。在与PCD无关的基因中鉴定出的变异包括 和 中的变异,这表明这些基因的功能障碍会导致人类出现左右侧缺陷。此外,我们在 和 中检测到了可能与内脏反位相关的候选变异。本研究的低突变检测率与其他先前发表的研究一致,表明存在非编码基因变异、假定的基因镶嵌现象、表观遗传或环境效应导致左右侧缺陷的可能性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c88/9083912/8d1e58495b4a/fgene-13-861236-g001.jpg

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