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来自……的乙酰乳酸脱羧酶的结构-功能关系研究

Studies on structure-function relationships of acetolactate decarboxylase from .

作者信息

Ji Fangling, Feng Yanbin, Li Mingyang, Yang Yongliang, Wang Tianqi, Wang Jingyun, Bao Yongming, Xue Song

机构信息

School of Life Science and Biotechnology, Dalian University of Technology Dalian Liaoning 116024 P. R. China

Marine Bioengineering Group, Dalian Institute of Chemical Physics, Chinese Academy of Sciences Dalian Liaoning 116023 P. R. China

出版信息

RSC Adv. 2018 Nov 20;8(68):39066-39073. doi: 10.1039/c8ra07379a. eCollection 2018 Nov 16.

Abstract

Acetoin is an important bio-based platform chemical with wide applications. Among all bacterial strains, is a well-known acetoin producer α-acetolactate decarboxylase (ALDC), which converts α-acetolactate into acetoin and is identified as the key enzyme in the biosynthetic pathway of acetoin. In this work, the enzyme properties of ALDC (-ALDC) were characterized, revealing a value of 12.19 mM and a value of 0.96 s. Meanwhile, the optimum pH of -ALDC was 6.5, and the activity of -ALDC was activated by Mn, Ba, Mg, Zn and Ca, while Cu and Fe significantly inhibited ALDC activity. More importantly, we solved and reported the first crystal structure of -ALDC at 2.4 Å resolution. The active centre consists of a zinc ion coordinated by highly conserved histidines (199, 201 and 212) and glutamates (70 and 259). However, the conserved Arg150 in -ALDC orients away from the zinc ion in the active centre of the molecule, losing contact with the zinc ion. Molecular docking of the two enantiomers of α-acetolactate, ()-acetolactate and ()-acetolactate allows us to further investigate the interaction networks of -ALDC with the unique conformation of Arg150. In the models, no direct contacts are observed between Arg150 and the substrates, which is unlikely to maintain the stabilization function of Arg150 in the catalytic reaction. The structure of -ALDC provides valuable information about its function, allowing a deeper understanding of the catalytic mechanism of ALDCs.

摘要

乙偶姻是一种重要的生物基平台化学品,具有广泛的应用。在所有细菌菌株中,是一种著名的乙偶姻生产者α-乙酰乳酸脱羧酶(ALDC),它将α-乙酰乳酸转化为乙偶姻,并被确定为乙偶姻生物合成途径中的关键酶。在这项工作中,对ALDC(-ALDC)的酶学性质进行了表征,其Km值为12.19 mM,kcat值为0.96 s。同时,-ALDC的最佳pH值为6.5,-ALDC的活性被Mn、Ba、Mg、Zn和Ca激活,而Cu和Fe显著抑制ALDC活性。更重要的是,我们解析并报道了-ALDC在2.4 Å分辨率下的首个晶体结构。活性中心由一个锌离子组成,该锌离子由高度保守的组氨酸(199、201和212)和谷氨酸(70和259)配位。然而,-ALDC中保守的Arg150在分子活性中心远离锌离子,失去了与锌离子的接触。α-乙酰乳酸的两种对映体()-乙酰乳酸和()-乙酰乳酸的分子对接使我们能够进一步研究-ALDC与Arg150独特构象的相互作用网络。在模型中,未观察到Arg150与底物之间的直接接触,这不大可能维持Arg150在催化反应中的稳定功能。-ALDC的结构为其功能提供了有价值的信息,有助于更深入地理解ALDCs的催化机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c9/9090609/1a707b12d220/c8ra07379a-s1.jpg

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