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从大眼金枪鱼中分离出的两株代表性菌株的基因组分析:生物膜及与腐败相关的行为

Genomic Analysis of Two Representative Strains of Isolated from Bigeye Tuna: Biofilm and Spoilage-Associated Behavior.

作者信息

Yi Zhengkai, Xie Jing

机构信息

College of Food Science & Technology, Shanghai Ocean University, Shanghai 201306, China.

Shanghai Professional Technology Service Platform on Cold Chain Equipment Performance and Energy Saving Evaluation, Shanghai 201306, China.

出版信息

Foods. 2022 Apr 27;11(9):1261. doi: 10.3390/foods11091261.

DOI:10.3390/foods11091261
PMID:35563985
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9100107/
Abstract

can cause the spoilage of seafood and shorten its shelf life. In this study, both strains of (YZ08 and YZ-J) isolated from spoiled bigeye tuna were subjected to in-depth phenotypic and genotypic characterization to better understand their roles in seafood spoilage. The complete genome sequences of strains YZ08 and YZ-J were reported. Unique genes of the two strains were identified by pan-genomic analysis. In vitro experiments revealed that YZ08 and YZ-J could adapt to various environmental stresses, including cold-shock temperature, pH, NaCl, and nutrient stresses. YZ08 was better at adapting to NaCl stress, and its genome possessed more NaCl stress-related genes compared with the YZ-J strain. YZ-J was a higher biofilm and exopolysaccharide producer than YZ08 at 4 and 30 °C, while YZ08 showed greater motility and enhanced capacity for biogenic amine metabolism, trimethylamine metabolism, and sulfur metabolism compared with YZ-J at both temperatures. That YZ08 produced low biofilm and exopolysaccharide contents and displayed high motility may be associated with the presence of more a greater number of genes encoding chemotaxis-related proteins (X) and low expression of the A operon. This study provided novel molecular targets for the development of new antiseptic antisepsis strategies.

摘要

会导致海鲜变质并缩短其保质期。在本研究中,从变质的大眼金枪鱼中分离出的两株菌(YZ08和YZ-J)进行了深入的表型和基因型特征分析,以更好地了解它们在海鲜变质中的作用。报道了YZ08和YZ-J菌株的全基因组序列。通过泛基因组分析鉴定了这两株菌的独特基因。体外实验表明,YZ08和YZ-J能够适应各种环境压力,包括冷休克温度、pH值、NaCl和营养压力。YZ08更能适应NaCl压力,与YZ-J菌株相比,其基因组拥有更多与NaCl压力相关的基因。在4℃和30℃时,YZ-J比YZ08产生更多的生物膜和胞外多糖,而在这两个温度下,YZ08与YZ-J相比表现出更大的运动性以及在生物胺代谢、三甲胺代谢和硫代谢方面增强的能力。YZ08产生低含量的生物膜和胞外多糖并表现出高运动性,这可能与存在更多编码趋化相关蛋白(X)的基因以及A操纵子的低表达有关。本研究为开发新的防腐策略提供了新的分子靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/eaae6bf712df/foods-11-01261-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/cc0cb7a3c06e/foods-11-01261-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/586a7b44c6cd/foods-11-01261-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/790c6e18bd72/foods-11-01261-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/fc92e35536d3/foods-11-01261-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/f57c457ce920/foods-11-01261-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/eaae6bf712df/foods-11-01261-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/cc0cb7a3c06e/foods-11-01261-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/586a7b44c6cd/foods-11-01261-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/790c6e18bd72/foods-11-01261-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/fc92e35536d3/foods-11-01261-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/f57c457ce920/foods-11-01261-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541e/9100107/eaae6bf712df/foods-11-01261-g006.jpg

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