Jabin Darakshan, Kumar Ajay
Department of Biotechnology, Faculty of Engineering and Technology, Rama University, G.T. Road, Kanpur, 209217, India.
J Genet Eng Biotechnol. 2022 May 16;20(1):72. doi: 10.1186/s43141-022-00364-x.
Among the most common causes of invasive aspergillosis and acute bronchopulmonary aspergillosis is Aspergillus fumigatus. Transmission with A. fumigatus produces aggressive aspergillosis in allogeneic haematopoietic stem cell transplant recipients, HIV patients, and cancer patients. Asthmatics and cystic fibrosis patients are allergic to A. fumigatus. MHC class-II binding epitopes can initiate immunogenic responses in patients. In this study, we deployed immunoinformatic study to reveal epitopes from fungal proteins.
In modern research, we found multiple epitopes ITLKLLHRYSYKLAG, KLVLRAFPNHFRGDS, RYSYKLAGVNQVDVV, GKSFELNQAARAVTQ, and LHRYSYKLAGVNQVD from crucial proteins of A. fumigatus 5,8-linoleate diol synthase (ACO55067.2) and ChainB-chitinase A1 (2XVN_B). RYSYKLAGVNQVDVV, GKSFELNQAARAVTQ, and LHRYSYKLAGVNQVD epitopes interact with HLA-DRB01_0101, while ITLKLLHRYSYKLAG and KLVLRAFPNHFRGDS epitopes interact with HLA-DRB01_1501. Molecular docking analysis reveals atomic contact energy (ACE) value for these five epitopes shown below -5 Kcal/mol in docked state.
The invasive aspergillosis and acute bronchopulmonary aspergillosis are caused by harmful fungal pathogen Aspergillus fumigatus. Our modern immunoinformatic research shows ITLKLLHRYSYKLAG, KLVLRAFPNHFRGDS, RYSYKLAGVNQVDVV, GKSFELNQAARAVTQ, and LHRYSYKLAGVNQVD epitopes could bind to MHC-II HLA allelic determinants and can initiate immunogenic response in patients affected by Aspergillus fumigatus.
烟曲霉是侵袭性曲霉病和急性支气管肺曲霉病最常见的病因之一。烟曲霉传播会在异基因造血干细胞移植受者、艾滋病患者和癌症患者中引发侵袭性曲霉病。哮喘患者和囊性纤维化患者对烟曲霉过敏。MHC-II类结合表位可在患者体内引发免疫原性反应。在本研究中,我们开展免疫信息学研究以揭示真菌蛋白中的表位。
在现代研究中,我们从烟曲霉5,8-亚油酸二醇合酶(ACO55067.2)和链B-几丁质酶A1(2XVN_B)的关键蛋白中发现了多个表位,即ITLKLLHRYSYKLAG、KLVLRAFPNHFRGDS、RYSYKLAGVNQVDVV、GKSFELNQAARAVTQ和LHRYSYKLAGVNQVD。RYSYKLAGVNQVDVV、GKSFELNQAARAVTQ和LHRYSYKLAGVNQVD表位与HLA-DRB01_0101相互作用,而ITLKLLHRYSYKLAG和KLVLRAFPNHFRGDS表位与HLA-DRB01_1501相互作用。分子对接分析显示,这五个表位在对接状态下的原子接触能(ACE)值均低于-5千卡/摩尔。
侵袭性曲霉病和急性支气管肺曲霉病由有害真菌病原体烟曲霉引起。我们的现代免疫信息学研究表明,ITLKLLHRYSYKLAG、KLVLRAFPNHFRGDS、RYSYKLAGVNQVDVV、GKSFELNQAARAVTQ和LHRYSYKLAGVNQVD表位可与MHC-II HLA等位基因决定簇结合,并能在受烟曲霉影响的患者体内引发免疫原性反应。