Institute of Science and Technology Austria, 3400 Klosterneuburg, Austria.
J Chem Phys. 2022 May 21;156(19):194902. doi: 10.1063/5.0087769.
By varying the concentration of molecules in the cytoplasm or on the membrane, cells can induce the formation of condensates and liquid droplets, similar to phase separation. Their thermodynamics, much studied, depends on the mutual interactions between microscopic constituents. Here, we focus on the kinetics and size control of 2D clusters, forming on membranes. Using molecular dynamics of patchy colloids, we model a system of two species of proteins, giving origin to specific heterotypic bonds. We find that concentrations, together with valence and bond strength, control both the size and the growth time rate of the clusters. In particular, if one species is in large excess, it gradually saturates the binding sites of the other species; the system then becomes kinetically arrested and cluster coarsening slows down or stops, thus yielding effective size selection. This phenomenology is observed both in solid and fluid clusters, which feature additional generic homotypic interactions and are reminiscent of the ones observed on biological membranes.
通过改变细胞质或细胞膜上分子的浓度,细胞可以诱导凝聚物和液滴的形成,类似于相分离。它们的热力学性质,已经有大量研究,取决于微观成分之间的相互作用。在这里,我们专注于在膜上形成的二维团簇的动力学和大小控制。我们使用带有斑点的胶体的分子动力学,模拟了两种蛋白质的系统,产生了特定的异质键。我们发现,浓度,以及价数和键强度,共同控制着团簇的大小和生长时间速率。特别是,如果一种物质大量过剩,它会逐渐饱和另一种物质的结合位点;然后,系统会被动力学捕获,团簇变粗的速度会减慢或停止,从而实现有效的尺寸选择。这种现象在固体和流体团簇中都观察到,它们具有额外的通用同质相互作用,让人联想到在生物膜上观察到的相互作用。