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小分子靶向单 ADP-核糖基化 PARPs 的药物化学观点。

Medicinal Chemistry Perspective on Targeting Mono-ADP-Ribosylating PARPs with Small Molecules.

机构信息

Department of Pharmaceutical Sciences, University of Perugia, 06123 Perugia, Italy.

Faculty of Biochemistry and Molecular Medicine & Biocenter Oulu, University of Oulu, 5400 Oulu, Finland.

出版信息

J Med Chem. 2022 Jun 9;65(11):7532-7560. doi: 10.1021/acs.jmedchem.2c00281. Epub 2022 May 24.

Abstract

Major advances have recently defined functions for human mono-ADP-ribosylating PARP enzymes (mono-ARTs), also opening up potential applications for targeting them to treat diseases. Structural biology combined with medicinal chemistry has allowed the design of potent small molecule inhibitors which typically bind to the catalytic domain. Most of these inhibitors are at the early stages, but some have already a suitable profile to be used as chemical tools. One compound targeting PARP7 has even progressed to clinical trials. In this review, we collect inhibitors of mono-ARTs with a typical "H-Y-Φ" motif (Φ = hydrophobic residue) and focus on compounds that have been reported as active against one or a restricted number of enzymes. We discuss them from a medicinal chemistry point of view and include an analysis of the available crystal structures, allowing us to craft a pharmacophore model that lays the foundation for obtaining new potent and more specific inhibitors.

摘要

最近,人类单 ADP-核糖基化 PARP 酶(单 ARTs)的功能已被深入研究,这也为靶向治疗疾病提供了潜在的应用。结构生物学与药物化学相结合,使设计出强效的小分子抑制剂成为可能,这些抑制剂通常结合在催化结构域上。这些抑制剂中的大多数都处于早期阶段,但已有一些抑制剂具有合适的特性,可作为化学工具使用。其中一种针对 PARP7 的化合物甚至已进入临床试验阶段。在这篇综述中,我们收集了具有典型“H-Y-Φ”基序(Φ=疏水性残基)的单 ARTs 抑制剂,并重点讨论了那些被报道对一种或少数几种酶具有活性的化合物。我们从药物化学的角度对它们进行了讨论,并分析了现有的晶体结构,这使我们能够构建一个药效团模型,为获得新的强效且更具特异性的抑制剂奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe53/9189837/701905314261/jm2c00281_0001.jpg

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