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利用分子对接和动力学研究验证醉茄素 A 的新型治疗活性。

validation of novel therapeutic activities of withaferin a using molecular docking and dynamics studies.

机构信息

Applied and Industrial Biotechnology Laboratory, Department of Life Sciences, CHRIST (Deemed-to-Be University), Bangalore, Karnataka, India.

Faculty of life sciences, University of Jena, (Friedrich-Schiller-Universität Jena), Jena, Germany.

出版信息

J Biomol Struct Dyn. 2023 Jul;41(11):5045-5056. doi: 10.1080/07391102.2022.2078410. Epub 2022 May 24.

DOI:10.1080/07391102.2022.2078410
PMID:35608923
Abstract

Withaferin A is a bioactive molecule of We access its efficacy against various target proteins associated with Cancer, Type-II Diabetes and hypercholesterolemia using molecular docking. Although it's efficacy against some of these targets have been reported earlier, we validate each mechanism in order to report the most appropriate mechanism of action. We explain the anti-cancer activity of Withaferin A by inhibition of Mortalin (mtHsp70) and Nrf2 protein with binding energies -8.85 kcal/mol and -12.59 kcal/mol respectively. Similarly, the anti-diabetic activity could be explained by inhibition of alpha and betα-glucosidase with binding energies -6.44 and -4.43 kcal/mol respectively and the cholesterol reduction could be explained by its ability to inhibition of NPC1 and SRB1 with binding energies -5.73 and -7.16 kcal/mol respectively. The molecular dynamics of the apoprotein and the protein-ligand complex simulated for the best targets of each activity namely Nrf2 protein for anti-cancer, α-glucosidase for anti-diabetic and SR-B1 for anti-hypercholesterolemia activity indicated the formation of stable complexes due to low RMSD deviations, low RMSF fluctuations and low RG values after the docking simulation. Finally, an ADME + T (Adsorption, distribution, metabolism, excretion and toxicity) prediction on Withaferin A showed that it obeyed all the Lipinsky's rules and qualified the drug-like criteria. All these results validate that Withaferin A possess potential anti-cancer, anti-diabetic and cholesterol reducing properties. This is the first report that indicates the possibility of Withaferin A binding and inhibiting SR-B1 as a mechanism of its anti-hypercholesterolemia activity.

摘要

醉茄素 A 是一种具有生物活性的分子,我们利用分子对接技术研究其对与癌症、2 型糖尿病和高胆固醇血症相关的各种靶蛋白的疗效。尽管此前已经有报道称其对其中一些靶点有效,但我们对每种机制进行了验证,以便报告最恰当的作用机制。我们通过抑制 Mortalin(mtHsp70)和 Nrf2 蛋白来解释醉茄素 A 的抗癌活性,其结合能分别为-8.85 kcal/mol 和-12.59 kcal/mol。同样,抗糖尿病活性可以通过抑制α和β-葡萄糖苷酶来解释,其结合能分别为-6.44 kcal/mol 和-4.43 kcal/mol,胆固醇降低可以通过抑制 NPC1 和 SRB1 来解释,其结合能分别为-5.73 kcal/mol 和-7.16 kcal/mol。对每种活性的最佳靶标(即抗癌活性的 Nrf2 蛋白、抗糖尿病的α-葡萄糖苷酶和抗高胆固醇血症的 SR-B1)的apo 蛋白和蛋白-配体复合物进行分子动力学模拟表明,由于对接模拟后 RMSD 偏差、RMSF 波动和 RG 值较低,形成了稳定的复合物。最后,对醉茄素 A 的 ADME+T(吸附、分布、代谢、排泄和毒性)预测表明,它符合所有 Lipinski 规则,并符合类药性标准。所有这些结果都验证了醉茄素 A 具有潜在的抗癌、抗糖尿病和降胆固醇特性。这是第一个表明醉茄素 A 结合并抑制 SR-B1 作为其抗高胆固醇血症活性机制的可能性的报告。

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