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深层地下条件下核酸对与火星相关盐类的结构响应

Structural Responses of Nucleic Acids to Mars-Relevant Salts at Deep Subsurface Conditions.

作者信息

Knop Jim-Marcel, Mukherjee Sanjib K, Gault Stewart, Cockell Charles S, Winter Roland

机构信息

Physical Chemistry I-Biophysical Chemistry, Faculty of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn Street 4a, 44227 Dortmund, Germany.

UK Centre for Astrobiology, SUPA School of Physics and Astronomy, University of Edinburgh, James Clerk Maxwell Building, Peter Guthrie Tait Road, Edinburgh EH9 3FD, UK.

出版信息

Life (Basel). 2022 May 2;12(5):677. doi: 10.3390/life12050677.

DOI:10.3390/life12050677
PMID:35629344
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9144689/
Abstract

High pressure deep subsurface environments of Mars may harbor high concentrations of dissolved salts, such as perchlorates, yet we know little about how these salts influence the conditions for life, particularly in combination with high hydrostatic pressure. We investigated the effects of high magnesium perchlorate concentrations compared to sodium and magnesium chloride salts and high pressure on the conformational dynamics and stability of double-stranded B-DNA and, as a representative of a non-canonical DNA structure, a DNA-hairpin (HP), whose structure is known to be rather pressure-sensitive. To this end, fluorescence spectroscopies including single-molecule FRET methodology were applied. Our results show that the stability both of the B-DNA as well as the DNA-HP is largely preserved at high pressures and high salt concentrations, including the presence of chaotropic perchlorates. The perchlorate anion has a small destabilizing effect compared to chloride, however. These results show that high pressures at the kbar level and perchlorate anions can modify the stability of nucleic acids, but that they do not represent a barrier to the gross stability of such molecules in conditions associated with the deep subsurface of Mars.

摘要

火星的高压深层地下环境可能含有高浓度的溶解盐,如高氯酸盐,但我们对这些盐如何影响生命条件知之甚少,尤其是在与高静水压力共同作用的情况下。我们研究了与氯化钠和氯化镁盐相比,高浓度的高氯酸镁以及高压对双链B-DNA构象动力学和稳定性的影响,并且作为非经典DNA结构的代表,研究了对一种DNA发夹结构(HP)的影响,已知该结构对压力相当敏感。为此,我们应用了包括单分子荧光共振能量转移方法在内的荧光光谱技术。我们的结果表明,在高压和高盐浓度条件下,包括存在离液序列高氯酸盐时,B-DNA以及DNA-HP的稳定性在很大程度上得以保留。然而,与氯离子相比,高氯酸根阴离子具有较小的去稳定作用。这些结果表明,千巴级别的高压和高氯酸根阴离子可以改变核酸的稳定性,但在与火星深层地下相关的条件下,它们并不构成此类分子总体稳定性的障碍。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1096/9144689/1629b933ca61/life-12-00677-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1096/9144689/36359bdb0784/life-12-00677-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1096/9144689/331af25326a4/life-12-00677-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1096/9144689/1629b933ca61/life-12-00677-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1096/9144689/36359bdb0784/life-12-00677-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1096/9144689/331af25326a4/life-12-00677-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1096/9144689/1629b933ca61/life-12-00677-g003.jpg

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本文引用的文献

1
Ions in the Deep Subsurface of Earth, Mars, and Icy Moons: Their Effects in Combination with Temperature and Pressure on tRNA-Ligand Binding.地球、火星和冰卫星深部的离子:它们在温度和压力的共同作用下对 tRNA-配体结合的影响。
Int J Mol Sci. 2021 Oct 8;22(19):10861. doi: 10.3390/ijms221910861.
2
The Effects of Temperature and Pressure on Protein-Ligand Binding in the Presence of Mars-Relevant Salts.在存在与火星相关盐类的情况下,温度和压力对蛋白质-配体结合的影响。
Biology (Basel). 2021 Jul 20;10(7):687. doi: 10.3390/biology10070687.
3
Structural responses of model biomembranes to Mars-relevant salts.
模型生物膜对火星相关盐类的结构响应。
Phys Chem Chem Phys. 2021 Jul 7;23(26):14212-14223. doi: 10.1039/d1cp02092g.
4
Perchlorate Salts Exert a Dominant, Deleterious Effect on the Structure, Stability, and Activity of α-Chymotrypsin.高氯酸盐盐对 α-糜蛋白酶的结构、稳定性和活性产生主要的、有害的影响。
Astrobiology. 2021 Apr;21(4):405-412. doi: 10.1089/ast.2020.2223.
5
Biomolecular Condensates under Extreme Martian Salt Conditions.极端火星盐条件下的生物分子凝聚物。
J Am Chem Soc. 2021 Apr 7;143(13):5247-5259. doi: 10.1021/jacs.1c01832. Epub 2021 Mar 23.
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Single-molecule kinetic studies of DNA hybridization under extreme pressures.极端压力下 DNA 杂交的单分子动力学研究。
Phys Chem Chem Phys. 2020 Nov 7;22(41):23491-23501. doi: 10.1039/d0cp04035e. Epub 2020 Oct 20.
7
High pressures increase α-chymotrypsin enzyme activity under perchlorate stress.在高氯酸盐胁迫下,高压会增加α-糜蛋白酶的酶活性。
Commun Biol. 2020 Oct 2;3(1):550. doi: 10.1038/s42003-020-01279-4.
8
The Global Search for Liquid Water on Mars from Orbit: Current and Future Perspectives.从轨道上对火星液态水的全球搜索:现状与未来展望。
Life (Basel). 2020 Jul 24;10(8):120. doi: 10.3390/life10080120.
9
Interrogating the Structural Dynamics and Energetics of Biomolecular Systems with Pressure Modulation.利用压力调制研究生物分子体系的结构动力学和能量学。
Annu Rev Biophys. 2019 May 6;48:441-463. doi: 10.1146/annurev-biophys-052118-115601. Epub 2019 Apr 3.
10
Radar evidence of subglacial liquid water on Mars.火星上的亚表层液态水的雷达证据。
Science. 2018 Aug 3;361(6401):490-493. doi: 10.1126/science.aar7268. Epub 2018 Jul 25.