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从卡塔尔一家污水处理厂分离的两种新型噬菌体中筛选有益“Enzybiotic”的证据。

Substantiation of propitious "Enzybiotic" from two novel bacteriophages isolated from a wastewater treatment plant in Qatar.

机构信息

Biological Sciences, Carnegie Mellon University Qatar, PO box 24866, Doha, Qatar.

Environmental Science Center (ESC), Qatar University, PO box 2713, Doha, Qatar.

出版信息

Sci Rep. 2022 May 31;12(1):9093. doi: 10.1038/s41598-022-13171-8.

Abstract

Lysin of bacteriophages isolated from a particular ecosystem could be inducted as a bio-controlling tool against the inhabiting pathogenic bacterial strains. Our study aims at both experimental and computational characterization of the identical lysin gene product inherent in the genomes of two novel Myoviridae bacteriophages, Escherichia Phage C600M2 (GenBank accession number OK040807, Protein ID: UCJ01465) and Escherichia Phage CL1 (GenBank Genome accession number OK040806.1, Protein ID: UCJ01321) isolated from wastewater collected from the main water treatment plant in Qatar. The lysin protein, evinced to be a globular N-acetyl-muramidase with intrinsic "cd00737: endolysin_autolysin" domain, was further expressed and purified to be experimentally validated by turbidimetric assay for its utility as an anti-bacterial agent. Comprehensive computational analysis revealed that the scrutinized lysin protein shared 85-98% sequence identity with 61 bacteriophages, all native to wastewater allied environments. Despite varied Host Recognition Components encoded in their genomes, the similitude of lysins, suggests its apparent significance in host-pathogen interactions endemic to wastewater environment. The present study substantiates the identical lysin from Escherichia Phage C600M2 and Escherichia Phage CL1 as propitious "enzybiotic", a hybrid term to describe enzymes analogous to anti-biotics to combat antibiotic-resistant bacteria by in silico analysis and subsequent experimental validation.

摘要

从特定生态系统中分离出的噬菌体溶菌酶可以被诱导作为一种生物控制工具,用于对抗栖息的致病性细菌菌株。我们的研究旨在对两个新型肌病毒科噬菌体(大肠杆菌噬菌体 C600M2(GenBank 登录号 OK040807,蛋白 ID:UCJ01465)和大肠杆菌噬菌体 CL1(GenBank 基因组登录号 OK040806.1,蛋白 ID:UCJ01321))的相同溶菌酶基因产物进行实验和计算表征,这些噬菌体是从卡塔尔主要水处理厂收集的废水中分离出来的。该溶菌酶蛋白被证明是一种球形的 N-乙酰胞壁质酶,具有内在的“cd00737:内溶素-自溶素”结构域,进一步进行了表达和纯化,并通过浊度测定实验进行了验证,以评估其作为抗菌剂的用途。全面的计算分析表明,该研究的溶菌酶蛋白与 61 种噬菌体共享 85-98%的序列同一性,这些噬菌体均源自废水相关环境。尽管它们的基因组中编码了不同的宿主识别成分,但溶菌酶的相似性表明它在废水环境中特有的宿主-病原体相互作用中具有明显的重要性。本研究证实了来自大肠杆菌噬菌体 C600M2 和大肠杆菌噬菌体 CL1 的相同溶菌酶是一种有利的“酶生素”,这是一个混合术语,用于描述类似于抗生素的酶,通过计算机分析和随后的实验验证来对抗抗生素耐药细菌。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a16/9156722/a32bc2f59762/41598_2022_13171_Fig1_HTML.jpg

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