Aix Marseille Univ, CNRS, INT, Institut de Neurosciences de la Timone, Marseille, France.
Aix Marseille Univ, CNRS, INT, Institut de Neurosciences de la Timone, Marseille, France; Dipartimento di Fisica e Astronomia "Galileo Galilei", Università di Padova, via Marzolo 8, Padova 35131, Italy; Padua Neuroscience Center, Università di Padova, via Orus 2, Padova 35131, Italy.
Neuroimage. 2022 Sep;258:119347. doi: 10.1016/j.neuroimage.2022.119347. Epub 2022 May 31.
The reproducibility crisis in neuroimaging and in particular in the case of underpowered studies has introduced doubts on our ability to reproduce, replicate and generalize findings. As a response, we have seen the emergence of suggested guidelines and principles for neuroscientists known as Good Scientific Practice for conducting more reliable research. Still, every study remains almost unique in its combination of analytical and statistical approaches. While it is understandable considering the diversity of designs and brain data recording, it also represents a striking point against reproducibility. Here, we propose a non-parametric permutation-based statistical framework, primarily designed for neurophysiological data, in order to perform group-level inferences on non-negative measures of information encompassing metrics from information-theory, machine-learning or measures of distances. The framework supports both fixed- and random-effect models to adapt to inter-individuals and inter-sessions variability. Using numerical simulations, we compared the accuracy in ground-truth retrieving of both group models, such as test- and cluster-wise corrections for multiple comparisons. We then reproduced and extended existing results using both spatially uniform MEG and non-uniform intracranial neurophysiological data. We showed how the framework can be used to extract stereotypical task- and behavior-related effects across the population covering scales from the local level of brain regions, inter-areal functional connectivity to measures summarizing network properties. We also present an open-source Python toolbox called Frites that includes the proposed statistical pipeline using information-theoretic metrics such as single-trial functional connectivity estimations for the extraction of cognitive brain networks. Taken together, we believe that this framework deserves careful attention as its robustness and flexibility could be the starting point toward the uniformization of statistical approaches.
神经影像学中的可重复性危机,尤其是在研究力度不足的情况下,引发了人们对我们重现、复制和推广发现的能力的怀疑。作为回应,我们已经看到了为神经科学家制定的良好科学实践建议指南和原则的出现,以进行更可靠的研究。尽管考虑到设计和大脑数据记录的多样性,这是可以理解的,但它也代表了一个反对可重复性的显著点。在这里,我们提出了一种基于非参数置换的统计框架,主要针对神经生理学数据,以便对包含信息论、机器学习或距离度量的非负信息度量进行组水平推断。该框架支持固定效应和随机效应模型,以适应个体间和个体间的变异性。通过数值模拟,我们比较了两种组模型(例如,用于多次比较的测试和聚类校正)的真实检索准确性。然后,我们使用空间均匀 MEG 和非均匀颅内神经生理学数据复制和扩展了现有的结果。我们展示了该框架如何用于提取跨人群的典型任务和行为相关效应,涵盖从大脑区域的局部水平、区域间功能连接到总结网络属性的度量的尺度。我们还介绍了一个名为 Frites 的开源 Python 工具箱,它包括使用信息论度量(如单次试验功能连接估计)提取认知脑网络的提议的统计管道。总之,我们认为这个框架值得仔细关注,因为它的稳健性和灵活性可能是统计方法统一化的起点。