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基于存档新生儿干血斑的组学分析:局限性与机遇。

Multi-omics analysis from archival neonatal dried blood spots: limitations and opportunities.

机构信息

Department of Paediatrics, The University of Melbourne, Melbourne, VIC, Australia.

Murdoch Children's Research Institute, Melbourne, VIC, Australia.

出版信息

Clin Chem Lab Med. 2022 Jun 8;60(9):1318-1341. doi: 10.1515/cclm-2022-0311. Print 2022 Aug 26.

DOI:10.1515/cclm-2022-0311
PMID:35670573
Abstract

Newborn screening (NBS) programs operate in many countries, processing millions of dried bloodspot (DBS) samples annually. In addition to early identification of various adverse health outcomes, these samples have considerable potential as a resource for population-based research that could address key questions related to child health. The feasibility of archival DBS samples for emerging targeted and untargeted multi-omics analysis has not been previously explored in the literature. This review aims to critically evaluate the latest advances to identify opportunities and challenges of applying omics analyses to NBS cards in a research setting. Medline, Embase and PubMed databases were searched to identify studies utilizing DBS for genomic, proteomic and metabolomic assays. A total of 800 records were identified after removing duplicates, of which 23 records were included in this review. These papers consisted of one combined genomic/metabolomic, four genomic, three epigenomic, four proteomic and 11 metabolomic studies. Together they demonstrate that the increasing sensitivity of multi-omic analytical techniques makes the broad use of NBS samples achievable for large cohort studies. Maintaining the pre-analytical integrity of the DBS sample through storage at temperatures below -20 °C will enable this important resource to be fully realized in a research capacity.

摘要

新生儿筛查(NBS)计划在许多国家开展,每年处理数以百万计的干血斑(DBS)样本。除了早期识别各种不良健康结果外,这些样本还有很大的潜力作为基于人群的研究资源,可以解决与儿童健康相关的关键问题。以前尚未在文献中探讨存档 DBS 样本在新兴的靶向和非靶向多组学分析中的可行性。本综述旨在批判性地评估最新进展,以确定在研究环境中应用组学分析对 NBS 卡的机会和挑战。通过检索 Medline、Embase 和 PubMed 数据库,以确定利用 DBS 进行基因组、蛋白质组和代谢组学分析的研究。在去除重复项后,共确定了 800 条记录,其中 23 条记录包含在本综述中。这些论文包括一项综合基因组/代谢组学研究、四项基因组研究、三项表观基因组学研究、四项蛋白质组学研究和十一项代谢组学研究。它们共同表明,多组学分析技术的灵敏度不断提高,使得广泛使用 NBS 样本进行大型队列研究成为可能。通过在低于-20°C 的温度下储存 DBS 样本,可以保持样本的分析前完整性,从而充分发挥这一重要资源在研究中的作用。

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