Centro de Investigación de Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Postgrado, Universidad Católica del Maule, Talca 3460000, Chile.
Laboratorio de Bioinformática y Química Computacional, Departamento de Medicina Traslacional, Facultad de Medicina, Universidad Católica del Maule, Talca 3480094, Chile.
J Chem Inf Model. 2022 Jun 27;62(12):3067-3078. doi: 10.1021/acs.jcim.2c00059. Epub 2022 Jun 7.
is a highly pathogenic Gram-negative microorganism associated with high mortality levels in burned or immunosuppressed patients or individuals affected by cystic fibrosis. Studies support a colonization mechanism whereby can breakdown the host cell membrane phospholipids through the sequential action of two enzymes: (I) hemolytic phospholipase C acting upon phosphatidylcholine or sphingomyelin to produce phosphorylcholine (Pcho) and (II) phosphorylcholine phosphatase (PchP) that hydrolyzes Pcho to generate choline and inorganic phosphate. This coordinated action provides the bacteria with carbon, nitrogen, and inorganic phosphate to support growth. Furthermore, PchP exhibits a distinctive inhibition mechanism by high substrate concentration. Here, we combine kinetic assays and computational approaches such as molecular docking, molecular dynamics, and free-energy calculations to describe the inhibitory site of PchP, which shares specific residues with the enzyme's active site. Our study provides insights into a coupled inhibition mechanism by the substrate, allowing us to postulate that the integrity of the inhibition site is needed to the correct functioning of the active site. Our results allow us to gain a better understanding of PchP function and provide the basis for a rational drug design that might contribute to the treatment of infections caused by this important opportunistic pathogen.
铜绿假单胞菌是一种高致病性的革兰氏阴性微生物,与烧伤或免疫抑制患者或囊性纤维化患者中高水平的死亡率有关。研究支持一种定植机制,即铜绿假单胞菌可以通过两种酶的顺序作用破坏宿主细胞膜磷脂:(I)溶血磷脂酶 C 作用于磷脂酰胆碱或鞘磷脂产生磷酸胆碱(Pcho)和(II)磷酸胆碱磷酸酶(PchP),将 Pcho 水解为胆碱和无机磷酸盐。这种协调作用为细菌提供了碳、氮和无机磷酸盐来支持生长。此外,PchP 表现出一种独特的抑制机制,即高底物浓度。在这里,我们结合了动力学测定和计算方法,如分子对接、分子动力学和自由能计算,来描述 PchP 的抑制位点,该位点与酶的活性位点共享特定的残基。我们的研究提供了对底物偶联抑制机制的深入了解,使我们能够假设抑制位点的完整性对于活性位点的正常功能是必要的。我们的结果使我们能够更好地理解 PchP 的功能,并为合理的药物设计提供基础,这可能有助于治疗由这种重要的机会性病原体引起的感染。