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2021年BARDA数据挑战赛中基于大数据集对儿科新冠肺炎患者严重健康风险的深度学习预测

Deep Learning Prediction of Severe Health Risks for Pediatric COVID-19 Patients with a Large Feature Set in 2021 BARDA Data Challenge.

作者信息

Mahmud Sajid, Soltanikazemi Elham, Boadu Frimpong, Dhakal Ashwin, Cheng Jianlin

机构信息

Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA.

出版信息

ArXiv. 2022 Jun 3:arXiv:2206.01696v2.

Abstract

Most children infected with COVID-19 have no or mild symptoms and can recover automatically by themselves, but some pediatric COVID-19 patients need to be hospitalized or even to receive intensive medical care (e.g., invasive mechanical ventilation or cardiovascular support) to recover from the illnesses. Therefore, it is critical to predict the severe health risk that COVID-19 infection poses to children to provide precise and timely medical care for vulnerable pediatric COVID-19 patients. However, predicting the severe health risk for COVID-19 patients including children remains a significant challenge because many underlying medical factors affecting the risk are still largely unknown. In this work, instead of searching for a small number of most useful features to make prediction, we design a novel large-scale bag-of-words like method to represent various medical conditions and measurements of COVID-19 patients. After some simple feature filtering based on logistical regression, the large set of features is used with a deep learning method to predict both the hospitalization risk for COVID-19 infected children and the severe complication risk for the hospitalized pediatric COVID-19 patients. The method was trained and tested the datasets of the Biomedical Advanced Research and Development Authority (BARDA) Pediatric COVID-19 Data Challenge held from Sept. 15 to Dec. 17, 2021. The results show that the approach can rather accurately predict the risk of hospitalization and severe complication for pediatric COVID-19 patients and deep learning is more accurate than other machine learning methods.

摘要

大多数感染新冠病毒的儿童没有症状或症状轻微,能够自行康复,但一些儿童新冠患者需要住院治疗,甚至需要接受重症监护(如有创机械通气或心血管支持)才能康复。因此,预测新冠病毒感染给儿童带来的严重健康风险,以便为脆弱的儿童新冠患者提供精准及时的医疗护理至关重要。然而,预测包括儿童在内的新冠患者的严重健康风险仍然是一项重大挑战,因为许多影响风险的潜在医学因素在很大程度上仍然未知。在这项工作中,我们没有寻找少数最有用的特征来进行预测,而是设计了一种新颖的类似词袋法的大规模方法来表示新冠患者的各种医疗状况和测量数据。在基于逻辑回归进行一些简单的特征筛选后,将大量特征与一种深度学习方法一起用于预测新冠感染儿童的住院风险以及住院儿童新冠患者的严重并发症风险。该方法在2021年9月15日至12月17日举行的生物医学高级研究与发展局(BARDA)儿童新冠数据挑战赛的数据集上进行了训练和测试。结果表明,该方法能够较为准确地预测儿童新冠患者的住院风险和严重并发症风险,并且深度学习比其他机器学习方法更准确。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6804/9176649/6c3ba5b57693/nihpp-2206.01696v2-f0001.jpg

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