Tan Liqiang, Cui Dong, Wang Liubin, Liu Qinling, Zhang Dongyang, Hu Xiaoli, Fu Yidan, Chen Shengxiang, Zou Yao, Chen Wei, Wen Weiqi, Yang Xuemei, Yang Yang, Li Pinwu, Tang Qian
College of Horticulture, Sichuan Agricultural University, Chengdu 611130, Sichuan, China.
Mingshan Tea Plant Breeding and Reproduce Farm of Sichuan Province, Yaan 625101, Sichuan, China.
Hortic Res. 2022 Apr 21;9:uhac086. doi: 10.1093/hr/uhac086. eCollection 2022.
The timing of bud flush (TBF) in the spring is one of the most important agronomic traits of tea plants (). In this study, we designed an open-pollination breeding program using 'Emei Wenchun' (EW, a clonal tea cultivar with extra-early TBF) as a female parent. A half-sib population ( = 388) was selected for genotyping using specific-locus amplified fragment sequencing. The results enabled the identification of paternity for 294 (75.8%) of the offspring, including 11 (2.8%) from EW selfing and 217 (55.9%) assigned to a common father, 'Chuanmu 217' (CM). The putative EW × CM full-sib population was used to construct a linkage map. The map has 4244 markers distributed in 15 linkage groups, with an average marker distance of 0.34 cM. A high degree of collinearity between the linkage map and physical map was observed. Sprouting index, a trait closely related to TBF, was recorded for the offspring population in 2020 and 2021. The trait had moderate variation, with coefficients of variation of 18.5 and 17.6% in 2020 and 2021, respectively. Quantitative trait locus (QTL) mapping that was performed using the linkage map identified two major QTLs and three minor QTLs related to the sprouting index. These QTLs are distributed on Chr3, Chr4, Chr5, Chr9, and Chr14 of the reference genome. A total of 1960 predicted genes were found within the confidence intervals of QTLs, and 22 key candidate genes that underlie these QTLs were preliminarily screened. These results are important for breeding and understanding the genetic base of the TBF trait of tea plants.
春季芽萌发时间(TBF)是茶树最重要的农艺性状之一。在本研究中,我们设计了一个开放授粉育种计划,以‘峨眉问春’(EW,一个具有特早TBF的无性系茶树品种)作为母本。选择了一个半同胞群体(n = 388),使用特定位点扩增片段测序进行基因分型。结果确定了294个(75.8%)后代的父本,其中包括11个(2.8%)来自EW自交,217个(55.9%)被确定为同一个父本‘川茶217’(CM)。假定的EW×CM全同胞群体被用于构建连锁图谱。该图谱有4244个标记分布在15个连锁群中,平均标记间距为0.34 cM。观察到连锁图谱与物理图谱之间具有高度的共线性。在2020年和2021年记录了与TBF密切相关的性状——发芽指数,该性状有中等程度的变异,2020年和2021年的变异系数分别为18.5%和17.6%。使用连锁图谱进行的数量性状位点(QTL)定位确定了与发芽指数相关的两个主要QTL和三个次要QTL。这些QTL分布在参考基因组的Chr3、Chr4、Chr5、Chr9和Chr14上。在QTL的置信区间内共发现1960个预测基因,并初步筛选出22个构成这些QTL的关键候选基因。这些结果对于茶树TBF性状的育种和理解其遗传基础具有重要意义。