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群落相互作用共同限制:海洋微生物群落背景下的营养限制

Community Interaction Co-limitation: Nutrient Limitation in a Marine Microbial Community Context.

作者信息

Bannon Catherine, Rapp Insa, Bertrand Erin M

机构信息

Department of Biology and Institute for Comparative Genomics, Dalhousie University, Halifax, NS, Canada.

Marine Biogeochemistry Division, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.

出版信息

Front Microbiol. 2022 May 25;13:846890. doi: 10.3389/fmicb.2022.846890. eCollection 2022.

Abstract

The simultaneous limitation of productivity by two or more nutrients, commonly referred to as nutrient co-limitation, affects microbial communities throughout the marine environment and is of profound importance because of its impacts on various biogeochemical cycles. Multiple types of co-limitation have been described, enabling distinctions based on the hypothesized mechanisms of co-limitation at a biochemical level. These definitions usually pertain to individuals and do not explicitly, or even implicitly, consider complex ecological dynamics found within a microbial community. However, limiting and co-limiting nutrients can be produced by a subset of microbial community members, suggesting that interactions within communities can underpin co-limitation. To address this, we propose a new category of nutrient co-limitation, community interaction co-limitation (CIC). During CIC, one part of the community is limited by one nutrient, which results in the insufficient production or transformation of a biologically produced nutrient that is required by another part of the community, often primary producers. Using cobalamin (vitamin B) and nitrogen fixation as our models, we outline three different ways CIC can arise based on current literature and discuss CIC's role in biogeochemical cycles. Accounting for the inherent and complex roles microbial community interactions play in generating this type of co-limitation requires an expanded toolset - beyond the traditional approaches used to identify and study other types of co-limitation. We propose incorporating processes and theories well-known in microbial ecology and evolution to provide meaningful insight into the controls of community-based feedback loops and mechanisms that give rise to CIC in the environment. Finally, we highlight the data gaps that limit our understanding of CIC mechanisms and suggest methods to overcome these and further identify causes and consequences of CIC. By providing this framework for understanding and identifying CIC, we enable systematic examination of the impacts this co-limitation can have on current and future marine biogeochemical processes.

摘要

两种或更多种养分对生产力的同时限制,通常称为养分共同限制,影响着整个海洋环境中的微生物群落,由于其对各种生物地球化学循环的影响,因而具有深远的重要性。已经描述了多种类型的共同限制,从而能够基于生物化学水平上共同限制的假设机制进行区分。这些定义通常适用于个体,并未明确甚至隐含地考虑微生物群落中存在的复杂生态动态。然而,限制和共同限制养分可能由微生物群落成员的一个子集产生,这表明群落内部的相互作用可能是共同限制的基础。为了解决这个问题,我们提出了一种新的养分共同限制类别,即群落相互作用共同限制(CIC)。在CIC过程中,群落的一部分受到一种养分的限制,这导致群落的另一部分(通常是初级生产者)所需的生物产生的养分产量不足或转化不足。以钴胺素(维生素B)和固氮作用为模型,我们根据现有文献概述了CIC产生的三种不同方式,并讨论了CIC在生物地球化学循环中的作用。考虑到微生物群落相互作用在产生这种共同限制中所起的内在和复杂作用,需要一套扩展的工具集——超越用于识别和研究其他类型共同限制的传统方法。我们建议纳入微生物生态学和进化中众所周知的过程和理论,以便深入了解基于群落的反馈回路的控制以及环境中产生CIC的机制。最后,我们强调了限制我们对CIC机制理解的数据缺口,并提出了克服这些缺口的方法,以及进一步确定CIC的原因和后果的方法。通过提供这个理解和识别CIC的框架,我们能够系统地研究这种共同限制对当前和未来海洋生物地球化学过程可能产生的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5157/9196195/e06c168f6a6c/fmicb-13-846890-g001.jpg

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