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不明原因复发性自然流产蜕膜中环状RNA、微小RNA和信使RNA表达谱及竞争性内源RNA网络的综合分析

Comprehensive Analysis of circRNAs, miRNAs, and mRNAs Expression Profiles and ceRNA Networks in Decidua of Unexplained Recurrent Spontaneous Abortion.

作者信息

Liu Xiaohua, Wu Jiabao, Nie Hua, Zhu Xiaoli, Song Ge, Han Lu, Qin Weibing

机构信息

NHC Key Laboratory of Male Reproduction and Genetics, Guangzhou, China.

Department of Center Laboratory, Guangdong Provincial Reproductive Science Institute (Guangdong Provincial Fertility Hospital), Guangzhou, China.

出版信息

Front Genet. 2022 May 31;13:858641. doi: 10.3389/fgene.2022.858641. eCollection 2022.

Abstract

The diagnosis and treatment of unexplained recurrent spontaneous abortion (URSA) are subject to debate, because the exact underlying mechanisms remain unclear. To address this issue, we elucidated the expression profiles of dysregulated circRNAs, miRNAs, and mRNAs and constructed circRNA-associated competitive endogenous RNA (ceRNA) networks by comparing the decidua of URSA with that of normal early pregnancy (NEP) using RNA-sequencing. In total, 550 mRNAs, 88 miRNAs, and 139 circRNAs were differentially expressed (DE) in decidua of URSA. Functional annotation revealed that DE mRNAs as well as potential target genes of DE miRNAs and DE circRNAs are mainly involved in immunologic function, such as antigen processing and presentation, allograft rejection, and T cell receptor signaling pathway. In addition, the top hub genes, including and , were identified. The mRNAs involved in ceRNA network were enriched in complement and coagulation cascades and protein processing in the endoplasmic reticulum. We found that circRNAs in the ceRNA network, which acted as decoys for hsa-miR-204-5p, were positively correlated with expression. Collectively, the results demonstrated that circRNAs, miRNAs, and mRNAs were aberrantly expressed in the decidua of patients with URSA and played a potential role in the development of URSA. Thus, the establishment of the ceRNA network may profoundly affect the diagnosis and therapy of URSA in the future.

摘要

不明原因复发性自然流产(URSA)的诊断和治疗仍存在争议,因为其确切的潜在机制尚不清楚。为了解决这一问题,我们通过RNA测序比较URSA患者与正常早孕(NEP)患者的蜕膜,阐明了失调的环状RNA(circRNA)、微小RNA(miRNA)和信使RNA(mRNA)的表达谱,并构建了circRNA相关的竞争性内源性RNA(ceRNA)网络。在URSA患者的蜕膜中,共有550个mRNA、88个miRNA和139个circRNA差异表达(DE)。功能注释显示,DE mRNA以及DE miRNA和DE circRNA的潜在靶基因主要参与免疫功能,如抗原加工和呈递、同种异体移植排斥以及T细胞受体信号通路。此外,还鉴定出了包括 和 在内的关键枢纽基因。ceRNA网络中涉及的mRNA在内质网中的补体和凝血级联反应以及蛋白质加工过程中富集。我们发现,ceRNA网络中的circRNA作为hsa-miR-204-5p的诱饵,与 表达呈正相关。总的来说,结果表明circRNA、miRNA和mRNA在URSA患者的蜕膜中异常表达,并在URSA的发生发展中发挥潜在作用。因此,ceRNA网络的建立可能在未来对URSA的诊断和治疗产生深远影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ef4/9194479/91da301ea08b/fgene-13-858641-g001.jpg

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