School of Engineering, The University of Edinburgh, The King's Buildings, Sanderson Building, Mayfield Road, Edinburgh EH9 3JL, U.K.
Department of Chemical and Process Engineering, Faculty of Engineering, University of Strathclyde, James Weir Building, Montrose Street, Glasgow G1 1XJ, U.K.
J Phys Chem B. 2022 Jun 30;126(25):4711-4722. doi: 10.1021/acs.jpcb.2c01975. Epub 2022 Jun 21.
Recent experiments with undersaturated aqueous glycine solutions have repeatedly exhibited the presence of giant liquid-like clusters or nanodroplets around 100 nm in diameter. These nanodroplets re-appear even after careful efforts for their removal and purification of the glycine solution. The composition of these clusters is not clear, although it has been suggested that they are mainly composed of glycine, a small and very soluble amino acid. To gain insights into this phenomenon, we study the aggregation of glycine in aqueous solutions at concentrations below the experimental solubility limit using large-scale molecular dynamics simulations under ambient conditions. Three protonation states of glycine (zwitterion = GLZ, anion = GLA, and cation = GLC) are simulated using molecular force fields based on the 1.14*CM1A partial charge scheme, which incorporates the OPLS all-atom force field and TIP3P water. When initiated from dispersed states, we find that giant clusters do not form in our simulations unless salt impurities are present. Moreover, if simulations are initiated from giant cluster states, we find that they tend to dissolve in the absence of salt impurities. Therefore, the simulation results provide little support for the possibility that the giant clusters seen in experiments are composed purely of glycine (and water). Considering that strenuous efforts are made in experiments to remove impurities such as salt, we propose that the giant clusters observed might instead result from the aggregation of reaction products of aqueous glycine, such as diketopiperazine or other oligoglycines which may be difficult to separate from glycine using conventional methods, or their co-aggregation with glycine.
最近对不饱和水合甘氨酸溶液的实验反复表明,直径约为 100nm 的巨大类液相团簇或纳米液滴存在。即使经过仔细努力去除和纯化甘氨酸溶液,这些纳米液滴也会重新出现。这些团簇的组成尚不清楚,尽管有人提出它们主要由甘氨酸组成,甘氨酸是一种非常小且可溶性的氨基酸。为了深入了解这一现象,我们使用环境条件下的大规模分子动力学模拟,研究低于实验溶解度极限的水溶液中甘氨酸的聚集。使用基于 1.14*CM1A 部分电荷方案的分子力场模拟甘氨酸的三种质子化状态(两性离子=GLZ、阴离子=GLA 和阳离子=GLC),该方案结合了 OPLS 全原子力场和 TIP3P 水。从分散状态开始时,我们发现除非存在盐杂质,否则我们的模拟中不会形成巨大的团簇。此外,如果从巨大的团簇状态开始模拟,我们发现它们往往会在没有盐杂质的情况下溶解。因此,模拟结果几乎不支持实验中看到的巨大团簇完全由甘氨酸(和水)组成的可能性。考虑到实验中会竭尽全力去除盐等杂质,我们提出观察到的巨大团簇可能是由水合甘氨酸的反应产物聚合而成的,例如二酮哌嗪或其他寡甘氨酸,这些物质可能难以用常规方法与甘氨酸分离,或者它们与甘氨酸的共同聚集。