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识别和验证与肿瘤突变负荷相关的特征,并结合免疫微环境浸润在肾上腺皮质癌中的作用。

Identification and validation of a tumor mutation burden-related signature combined with immune microenvironment infiltration in adrenocortical carcinoma.

机构信息

Department of Urology, the Second People's Hospital of Foshan, Affiliated Foshan Hospital of Southern Medical University, Foshan 528000, China.

出版信息

Math Biosci Eng. 2022 May 12;19(7):7055-7075. doi: 10.3934/mbe.2022333.

Abstract

Tumor mutation burden (TMB), an emerging molecular determinant, is accompanied by microsatellite instability and immune infiltrates in various malignancies. However, whether TMB is related to the prognosis or immune responsiveness of adrenocortical carcinoma (ACC) remains to be elucidated. This paper aims to investigate the impact of TMB on the prognosis and immune microenvironment infiltration in ACC. The somatic mutation data, gene expression profile, and corresponding clinicopathological information were retrieved from TCGA. The mutation landscape was summarized and visualized with the waterfall diagram. The ACC patients were divided into low and high TMB groups based on the median TMB value and differentially expressed genes (DEGs) between the two groups were identified. Diverse functional analyses were conducted to determine the functionality of the DEGs. The immune cell infiltration signatures were evaluated based on multiple algorithms. Eventually, a TMB Prognostic Signature (TMBPS) was established and its predictive accuracy for ACC was evaluated. Single nucleotide polymorphism and C > T were found to be more common than other missense mutations. In addition, lower TMB levels indicated improved survival outcomes and were correlated with younger age and earlier clinical stage. Functional analysis suggested that DEGs were primarily related to the cell cycle, DNA replication, and cancer progression. Additionally, significant differences in infiltration levels of activated CD4+ T cells, naive B cells, and activated NK cells were observed in two TMB groups. We also found that patients with higher TMBPS showed worse survival outcomes, which was validated in the Gene Expression Omnibus database. Our study systematically analyzed the mutation and identified a TMBPS combined with immune microenvironment infiltration in ACC. It is expected that this paper can promote the development of ACC treatment strategies.

摘要

肿瘤突变负担 (TMB) 是一种新兴的分子标志物,与多种恶性肿瘤中的微卫星不稳定性和免疫浸润有关。然而,TMB 是否与肾上腺皮质癌 (ACC) 的预后或免疫反应性有关仍需阐明。本文旨在探讨 TMB 对 ACC 预后和免疫微环境浸润的影响。从 TCGA 中检索了体细胞突变数据、基因表达谱和相应的临床病理信息。使用瀑布图总结和可视化突变景观。根据中位 TMB 值将 ACC 患者分为低 TMB 和高 TMB 组,并鉴定两组之间的差异表达基因 (DEGs)。进行了多种功能分析以确定 DEGs 的功能。基于多种算法评估免疫细胞浸润特征。最终建立了 TMB 预后标志 (TMBPS),并评估了其对 ACC 的预测准确性。单核苷酸多态性和 C>T 比其他错义突变更为常见。此外,较低的 TMB 水平表明生存结果改善,并且与年龄较小和临床分期较早相关。功能分析表明,DEGs 主要与细胞周期、DNA 复制和癌症进展有关。此外,在两个 TMB 组中观察到激活的 CD4+T 细胞、幼稚 B 细胞和激活的 NK 细胞浸润水平存在显著差异。我们还发现 TMBPS 较高的患者生存结果较差,这在基因表达综合数据库中得到了验证。我们的研究系统地分析了突变,并在 ACC 中鉴定了一个 TMBPS 与免疫微环境浸润相结合。期望本文能够促进 ACC 治疗策略的发展。

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