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通过全外显子组测序鉴定出与非综合征型动脉导管未闭相关的新候选基因中的罕见变异。

Rare Variants in Novel Candidate Genes Associated With Nonsyndromic Patent Ductus Arteriosus Identified With Whole-Exome Sequencing.

作者信息

Gao Ying, Wu Dan, Chen Bo, Chen Yinghui, Zhang Qi, Zhao Pengjun

机构信息

Department of Pediatric, Shidong Hospital, Shanghai, China.

Department of Cardiothoracic Surgery, School of Medicine, Heart Center, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.

出版信息

Front Genet. 2022 Jun 6;13:921925. doi: 10.3389/fgene.2022.921925. eCollection 2022.

Abstract

Patent ductus arteriosus (PDA) is one of the most common congenital heart defects causing pulmonary hypertension, infective endocarditis, and even death. The important role of genetics in determining spontaneous ductal closure has been well-established. However, as many of the identified variants are rare, thorough identification of the associated genetic factors is necessary to further explore the genetic etiology of PDA. We performed whole-exome sequencing (WES) on 39 isolated nonsyndromic PDA patients and 100 healthy controls. Rare variants and novel genes were identified through bioinformatic filtering strategies. The expression patterns of candidate genes were explored in human embryo heart samples. Eighteen rare damaging variants of six novel PDA-associated genes (, , , , , and ) were newly identified, which were highly expressed in human embryo hearts. WES is an efficient diagnostic tool for exploring the genetic pathogenesis of PDA. These findings contribute new insights into the molecular basis of PDA and may inform further studies on genetic risk factors for congenital heart defects.

摘要

动脉导管未闭(PDA)是导致肺动脉高压、感染性心内膜炎甚至死亡的最常见先天性心脏缺陷之一。遗传学在决定动脉导管自然闭合方面的重要作用已得到充分证实。然而,由于许多已鉴定出的变异是罕见的,因此有必要全面鉴定相关遗传因素,以进一步探索PDA的遗传病因。我们对39例孤立性非综合征型PDA患者和100例健康对照进行了全外显子组测序(WES)。通过生物信息学筛选策略鉴定了罕见变异和新基因。在人类胚胎心脏样本中探索了候选基因的表达模式。新鉴定出6个与PDA相关的新基因(、、、、和)的18个罕见有害变异,这些基因在人类胚胎心脏中高表达。WES是探索PDA遗传发病机制的一种有效诊断工具。这些发现为PDA的分子基础提供了新的见解,并可能为先天性心脏缺陷遗传危险因素的进一步研究提供参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ee7/9207465/7a5a339a629f/fgene-13-921925-g001.jpg

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