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基于卤素的 17β-HSD1 抑制剂:来自 DFT、对接和分子动力学模拟研究的见解。

Halogen-Based 17β-HSD1 Inhibitors: Insights from DFT, Docking, and Molecular Dynamics Simulation Studies.

机构信息

Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai 600 036, Tamil Nadu, India.

Department of Chemistry and Computational Chemistry Laboratory, Loyola Institute of Frontier Energy, Loyola College, Chennai 600 034, Tamil Nadu, India.

出版信息

Molecules. 2022 Jun 20;27(12):3962. doi: 10.3390/molecules27123962.

Abstract

The high expression of 17β-hydroxysteroid dehydrogenase type 1 (17β-HSD1) mRNA has been found in breast cancer tissues and endometriosis. The current research focuses on preparing a range of organic molecules as 17β-HSD1 inhibitors. Among them, the derivatives of hydroxyphenyl naphthol steroidomimetics are reported as one of the potential groups of inhibitors for treating estrogen-dependent disorders. Looking at the recent trends in drug design, many halogen-based drugs have been approved by the FDA in the last few years. Here, we propose sixteen potential hydroxyphenyl naphthol steroidomimetics-based inhibitors through halogen substitution. Our Frontier Molecular Orbitals (FMO) analysis reveals that the halogen atom significantly lowers the Lowest Unoccupied Molecular Orbital (LUMO) level, and iodine shows an excellent capability to reduce the LUMO in particular. Tri-halogen substitution shows more chemical reactivity via a reduced HOMO-LUMO gap. Furthermore, the computed DFT descriptors highlight the structure-property relationship towards their binding ability to the 17β-HSD1 protein. We analyze the nature of different noncovalent interactions between these molecules and the 17β-HSD1 using molecular docking analysis. The halogen-derived molecules showed binding energy ranging from -10.26 to -11.94 kcal/mol. Furthermore, the molecular dynamics (MD) simulations show that the newly proposed compounds provide good stability with 17β-HSD1. The information obtained from this investigation will advance our knowledge of the 17β-HSD1 inhibitors and offer clues to developing new 17β-HSD1 inhibitors for future applications.

摘要

17β-羟甾脱氢酶 1 型(17β-HSD1)mRNA 在乳腺癌组织和子宫内膜异位症中的高表达。目前的研究重点是制备一系列有机分子作为 17β-HSD1 抑制剂。其中,羟基萘酚甾体拟态物的衍生物被报道为治疗雌激素依赖性疾病的潜在抑制剂之一。从药物设计的最新趋势来看,在过去几年中,许多含卤素的药物已被 FDA 批准。在这里,我们通过卤素取代提出了十六种潜在的基于羟基萘酚甾体拟态物的抑制剂。我们的前沿分子轨道(FMO)分析表明,卤素原子显著降低了最低未占据分子轨道(LUMO)的能级,而碘尤其显示出降低 LUMO 的优异能力。三卤代取代通过降低 HOMO-LUMO 间隙显示出更高的化学反应性。此外,计算的 DFT 描述符突出了它们与 17β-HSD1 蛋白结合能力的结构-性质关系。我们使用分子对接分析分析这些分子与 17β-HSD1 之间不同非共价相互作用的性质。衍生自卤素的分子显示出从-10.26 到-11.94 kcal/mol 的结合能。此外,分子动力学(MD)模拟表明,新提出的化合物与 17β-HSD1 具有良好的稳定性。这项研究获得的信息将增进我们对 17β-HSD1 抑制剂的了解,并为开发用于未来应用的新型 17β-HSD1 抑制剂提供线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8865/9229637/e23271a09dcd/molecules-27-03962-sch001.jpg

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