Zhang Jingchen, He Xujian, Hu Jia, Li Tong
The First Affiliated Hospital, Zhejiang University, Hangzhou, China.
Front Genet. 2022 Jun 8;13:920350. doi: 10.3389/fgene.2022.920350. eCollection 2022.
Lung adenocarcinoma (LUAD) is one of the most common malignant tumors with high morbidity and mortality and is usually associated with therapeutic resistance and poor prognosis because of individual biological heterogeneity. There is an unmet need to screen for reliable parameters, especially immunotherapy-related biomarkers to predict the patient's outcomes. Necroptosis is a special caspase-independent form of necrotic cell death associated with the pathogenesis, progression, and prognosis of multiple tumors but the potential connection between necroptosis-related genes (NRGs) and LUAD still remains unclear. In this study, we expounded mutational and transcriptional alterations of 67 NRGs in 522 LUAD samples and proposed a consensus-clustering subtype of these patients into two cohorts with distinct immunological and clinical prognosis characteristics. Cluster B patients were associated with a better prognosis and characterized by relatively lower expression of NRGs, higher immune scores in the tumor microenvironment (TME), more mild clinical stages, and downregulated expression of immunotherapy checkpoints. Subsequently, the NRG score was further established to predict the overall survival (OS) of LUAD patients using univariate Cox, LASSO, and multivariate Cox regression analyses. The immunological characteristics and potential predictive capability of NRG scores were further validated by 583 LUAD patients in external datasets. In addition to better survival and immune-activated conditions, low-NRG-score cohorts exhibited a significant positive correlation with the mRNA stem index (mRNAsi) and tumor mutation burden (TMB) levels. Combined with classical clinical characteristics and NRG scores, we successfully defined a novel necroptosis-related nomogram to accurately predict the 1/3/5-year survival rate of individual LUAD patients, and the potential predictive capability was further estimated and validated in multiple test datasets with high AUC values. Integrated transcriptomic analysis helps us seek vital NRGs and supplements a novel clinical application of NRG scores in predicting the overall survival and therapeutic benefits for LUAD patients.
肺腺癌(LUAD)是最常见的恶性肿瘤之一,发病率和死亡率高,由于个体生物学异质性,通常与治疗耐药性和不良预后相关。迫切需要筛选可靠的参数,尤其是免疫治疗相关生物标志物,以预测患者的预后。坏死性凋亡是一种特殊的不依赖半胱天冬酶的坏死性细胞死亡形式,与多种肿瘤的发病机制、进展和预后相关,但坏死性凋亡相关基因(NRGs)与LUAD之间的潜在联系仍不清楚。在本研究中,我们阐述了522例LUAD样本中67个NRGs的突变和转录改变,并提出将这些患者进行一致性聚类亚型分析,分为两个具有不同免疫和临床预后特征的队列。B簇患者预后较好,其特征是NRGs表达相对较低、肿瘤微环境(TME)中免疫评分较高、临床分期较轻以及免疫治疗检查点表达下调。随后,通过单变量Cox、LASSO和多变量Cox回归分析进一步建立了NRG评分,以预测LUAD患者的总生存期(OS)。外部数据集中的583例LUAD患者进一步验证了NRG评分的免疫特征和潜在预测能力。除了更好的生存和免疫激活条件外,低NRG评分队列与mRNA干性指数(mRNAsi)和肿瘤突变负荷(TMB)水平呈显著正相关。结合经典临床特征和NRG评分,我们成功定义了一种新型坏死性凋亡相关列线图,以准确预测个体LUAD患者的1/3/5年生存率,并且在多个具有高AUC值的测试数据集中进一步评估和验证了其潜在预测能力。综合转录组分析有助于我们寻找重要的NRGs,并补充了NRG评分在预测LUAD患者总生存期和治疗益处方面的新临床应用。