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使用基于遗传学的优先级索引流程鉴定银屑病新的疾病药物靶点。

Identifying Novel Psoriatic Disease Drug Targets Using a Genetics-Based Priority Index Pipeline.

作者信息

Bui Audrey, Liu Jared, Hong Julie, Hadeler Edward, Mosca Megan, Brownstone Nicholas, Liao Wilson

机构信息

Department of Dermatology, University of California, San Francisco, CA 94015.

Department of Biology, St. Bonaventure University, St. Bonaventure, NY 14778.

出版信息

J Psoriasis Psoriatic Arthritis. 2021 Oct;6(4):185-197. doi: 10.1177/24755303211026023. Epub 2021 Jun 21.

Abstract

BACKGROUND

Despite numerous genome-wide association studies conducted in psoriasis and psoriatic arthritis, only a small fraction of the identified genes has been therapeutically targeted.

OBJECTIVE

We sought to identify and analyze potential therapeutic targets for psoriasis and psoriatic arthritis (PsA) using the priority index (Pi), a genetics-dependent drug target prioritization approach.

METHODS

Significant genetic variants from GWAS for psoriasis, PsA, and combined psoriatic disease were annotated and run through the Pi pipeline. Potential drug targets were identified based on genomic predictors, annotation predictors, pathway enrichment, and pathway crosstalk.

RESULTS

Several gene targets were identified for psoriasis and PsA that demonstrated biological associations to their respective diseases. Some are currently being explored as potential therapeutic targets (i.e. ICAM1, NF-kB, REV3L, ADRA1B for psoriasis; CCL11 for PsA); others have not yet been investigated (i.e. LNPEP, LCE3 for psoriasis; UBLCP1 for PsA). Additionally, many nodal points of potential intervention were identified as promising therapeutic targets. Of these, some are currently being studied such as TYK2 for psoriasis, and others have yet to be explored (i.e. PPP2CA, YAP1, PI3K, AKT, FOXO1, RELA, CSF2, IFNGR1, IFNGR2 for psoriasis; GNAQ, PLCB1, GNAI2 for PsA).

CONCLUSION

Through Pi, we identified data-driven candidate therapeutic gene targets and pathways for psoriasis and PsA. Given the sparse PsA specific genetic studies and PsA specific drug targets, this analysis could prove to be particularly valuable in the pipeline for novel psoriatic therapies.

摘要

背景

尽管针对银屑病和银屑病关节炎开展了大量全基因组关联研究,但仅一小部分已鉴定出的基因成为了治疗靶点。

目的

我们试图使用优先级指数(Pi)这一基于遗传学的药物靶点优先级确定方法,来鉴定和分析银屑病及银屑病关节炎(PsA)的潜在治疗靶点。

方法

对银屑病、PsA及合并银屑病疾病的全基因组关联研究中的显著遗传变异进行注释,并通过Pi流程运行。基于基因组预测因子、注释预测因子、通路富集和通路串扰来确定潜在药物靶点。

结果

确定了几个与银屑病和PsA相关的基因靶点,这些靶点显示出与各自疾病的生物学关联。其中一些目前正作为潜在治疗靶点进行探索(即银屑病的ICAM1、NF-κB、REV3L、ADRA1B;PsA的CCL11);其他一些尚未得到研究(即银屑病的LNPEP、LCE3;PsA的UBLCP1)。此外,还确定了许多潜在干预的节点作为有前景的治疗靶点。其中,一些目前正在研究中,如银屑病的TYK2,其他一些尚未探索(即银屑病的PPP2CA、YAP1、PI3K、AKT、FOXO1、RELA、CSF2、IFNGR1、IFNGR2;PsA的GNAQ、PLCB1、GNAI2)。

结论

通过Pi,我们确定了银屑病和PsA的数据驱动型候选治疗基因靶点及通路。鉴于PsA特异性遗传研究和PsA特异性药物靶点较少,该分析在新型银屑病治疗流程中可能被证明具有特别的价值。

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