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Wnt 通路可稳定上皮-间充质转化中的杂种表型:一种逻辑建模方法。

The Wnt pathway can stabilize hybrid phenotypes in the epithelial-mesenchymal transition: A logical modeling approach.

机构信息

Department of Physics, Universidade Federal de Santa Maria, Santa Maria, Rio Grande do Sul, Brazil; Children's Cancer Institute, Porto Alegre, Rio Grande do Sul, Brazil.

Department of Physics, Universidade Federal de Santa Maria, Santa Maria, Rio Grande do Sul, Brazil.

出版信息

Comput Biol Chem. 2022 Aug;99:107714. doi: 10.1016/j.compbiolchem.2022.107714. Epub 2022 Jun 13.

DOI:10.1016/j.compbiolchem.2022.107714
PMID:35763962
Abstract

The Wnt pathway is important to regulate a variety of biochemical functions and can contribute to cancer development through its influence on the epithelial-mesenchymal transition (EMT). Multiple circuits have been reported to participate in the regulation of the Wnt signaling, however, the way these circuits coordinately regulate this signaling is still unclear. Moreover, the mechanisms responsible for the appearance of hybrid phenotypes (cells presenting both E and M features) are not well determined. The hybrid phenotype can present much higher metastatic potential than the mesenchymal phenotype. In this study, we propose a Boolean model of the Wnt pathway signaling contemplating recent published biochemical information on hepatocarcinoma. The model presents good coherence with experimental data for perturbed and wild-type cases. With the model, we propose two new molecular circuits involving several molecules that can stabilize hybrid states during the EMT. Moreover, we found that the two well studied circuits, AKT1/β-catenin and SNAIL1/miR-34, can cooperate with the predicted ones to favor the stabilization of the hybrid states. These findings highlight some possible unrecognized mechanisms during Wnt signaling and may provide alternative therapeutic strategies to control cancer metastatization.

摘要

Wnt 通路对于调节多种生化功能非常重要,并且可以通过其对上皮-间充质转化(EMT)的影响来促进癌症的发展。已经有多个电路被报道参与了 Wnt 信号的调节,然而,这些电路如何协调调节这种信号仍然不清楚。此外,负责出现杂交表型(呈现出 E 和 M 特征的细胞)的机制尚未得到很好的确定。杂交表型比间充质表型具有更高的转移潜能。在这项研究中,我们提出了一个考虑到肝癌最近发表的生化信息的 Wnt 通路信号的布尔模型。该模型对于扰动和野生型情况的实验数据具有很好的一致性。通过该模型,我们提出了两个涉及几个分子的新分子电路,这些分子可以在 EMT 过程中稳定杂交状态。此外,我们发现两个研究得很好的电路,AKT1/β-catenin 和 SNAIL1/miR-34,可以与预测的电路合作,有利于杂交状态的稳定。这些发现强调了 Wnt 信号期间一些可能未被识别的机制,并可能提供控制癌症转移的替代治疗策略。

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