Kori Medi, Arga Kazim Yalcin, Mardinoglu Adil, Turanli Beste
Department of Bioengineering, Faculty of Engineering, Marmara University, Istanbul, Turkey.
Genetic and Metabolic Diseases Research and Investigation Center (GEMHAM), Marmara University, Istanbul, Turkey.
Front Pharmacol. 2022 Jun 13;13:884548. doi: 10.3389/fphar.2022.884548. eCollection 2022.
Cervical cancer is the fourth most commonly diagnosed cancer worldwide and, in almost all cases is caused by infection with highly oncogenic Human Papillomaviruses (HPVs). On the other hand, inflammation is one of the hallmarks of cancer research. Here, we focused on inflammatory proteins that classify cervical cancer patients by considering individual differences between cancer patients in contrast to conventional treatments. We repurposed anti-inflammatory drugs for therapy of HPV-16 and HPV-18 infected groups, separately. In this study, we employed systems biology approaches to unveil the diagnostic and treatment options from a precision medicine perspective by delineating differential inflammation-associated biomarkers associated with carcinogenesis for both subtypes. We performed a meta-analysis of cervical cancer-associated transcriptomic datasets considering subtype differences of samples and identified the differentially expressed genes (DEGs). Using gene signature reversal on HPV-16 and HPV-18, we performed both signature- and network-based drug reversal to identify anti-inflammatory drug candidates against inflammation-associated nodes. The anti-inflammatory drug candidates were evaluated using molecular docking to determine the potential of physical interactions between the anti-inflammatory drug and inflammation-associated nodes as drug targets. We proposed 4 novels anti-inflammatory drugs (AS-601245, betamethasone, narciclasin, and methylprednisolone) for the treatment of HPV-16, 3 novel drugs for the treatment of HPV-18 (daphnetin, phenylbutazone, and tiaprofenoic acid), and 5 novel drugs (aldosterone, BMS-345541, etodolac, hydrocortisone, and prednisolone) for the treatment of both subtypes. We proposed anti-inflammatory drug candidates that have the potential to be therapeutic agents for the prevention and/or treatment of cervical cancer.
宫颈癌是全球第四大常见确诊癌症,几乎在所有病例中都是由感染高致癌性人乳头瘤病毒(HPV)引起的。另一方面,炎症是癌症研究的标志之一。在此,我们聚焦于炎症蛋白,通过考虑癌症患者之间的个体差异,与传统治疗方法形成对比,对宫颈癌患者进行分类。我们分别将抗炎药物重新用于治疗HPV - 16和HPV - 18感染组。在本研究中,我们采用系统生物学方法,从精准医学的角度,通过描绘与两种亚型致癌作用相关的差异炎症相关生物标志物,揭示诊断和治疗方案。我们对考虑样本亚型差异的宫颈癌相关转录组数据集进行了荟萃分析,并确定了差异表达基因(DEG)。利用HPV - 16和HPV - 18的基因特征逆转,我们进行了基于特征和网络的药物逆转,以确定针对炎症相关节点的抗炎药物候选物。使用分子对接评估抗炎药物候选物,以确定抗炎药物与作为药物靶点的炎症相关节点之间物理相互作用的潜力。我们提出了4种用于治疗HPV - 16的新型抗炎药物(AS - 601245、倍他米松、石蒜碱和甲泼尼龙),3种用于治疗HPV - 18的新型药物(瑞香素、保泰松和噻洛芬酸),以及5种用于治疗两种亚型的新型药物(醛固酮、BMS - 345541、依托度酸、氢化可的松和泼尼松龙)。我们提出了有可能成为预防和/或治疗宫颈癌治疗剂的抗炎药物候选物。