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使用贝叶斯潜在类别模型评估应用于散装罐牛奶的酶联免疫吸附测定(ELISA)检测在预测奶牛群中都柏林沙门氏菌群体水平状况方面的准确性。

Estimation of the accuracy of an ELISA test applied to bulk tank milk for predicting herd-level status for Salmonella Dublin in dairy herds using Bayesian Latent Class Models.

作者信息

Um Maryse Michèle, Castonguay Marie-Hélène, Arsenault Julie, Bergeron Luc, Côté Geneviève, Fecteau Gilles, Francoz David, Giguère Julie, Amine Khalie Mahamad, Morin Isabelle, Dufour Simon

机构信息

Département de pathologie et microbiologie, Faculté de médecine vétérinaire, Université de Montréal, Saint-Hyacinthe, Canada; Op+lait, Saint-Hyacinthe, Canada; Groupe de recherche en épidémiologie des zoonoses et santé publique, Saint-Hyacinthe, Canada.

Lactanet, Sainte-Anne-de-Bellevue, Canada.

出版信息

Prev Vet Med. 2022 Sep;206:105699. doi: 10.1016/j.prevetmed.2022.105699. Epub 2022 Jun 22.

Abstract

Enzyme-Linked Immunosorbent Assay (ELISA) test is commonly used for detection of antibodies to Salmonella Dublin in individual bovine milk samples. However, little is known about its accuracy when used on bulk tank milk for determining herd-level S. Dublin status and when evaluated without assuming a perfect reference test. The objectives of this study were: i) to estimate the herd prevalence of S. Dublin among dairy cattle herds in Québec, Canada; ii) to estimate the herd sensitivity and specificity of a commercially available ELISA test when used on bulk milk; iii) to examine how the diagnostic test accuracy varies with different bulk milk ELISA cut-offs; and (iv) to assess the added value of combining ELISA screening of bulk milk and individual serum of 10 animals for determining S. Dublin herd status. A cohort of 302 dairy herds selected in three regions (population 1) and 58 herds that have already tested positive to S. Dublin (population 2) were recruited. A total of 715 bulk milk samples and 7150 individual blood samples from cattle over 3 months old (10 animals per herd) sampled on two occasions were collected. Testing was conducted using PrioCHECK™ Salmonella Ab bovine Dublin ELISA test for milk (Bmilk ELISA: test under investigation) and for serum of 10 individual animals (Serum10 ELISA: imperfect reference test) to determine the herd-level S. Dublin status. A latent class model for two populations, two tests, allowing for conditional dependence between tests was fit within a Bayesian framework. At cut-off PP % ≥ 15 for a Bmilk ELISA, which is used by provincial authorities, the herd prevalence of S. Dublin estimated using informative prior was 6.8 % (4.3-9.9) in population 1. The herd sensitivity and specificity estimates (95 % Bayesian Credibility Intervals) for Bmilk ELISA were 40.6 % (15.6-88.8) and 91.9 % (88.3-95.8), respectively. Positive and negative predictive values of Bmilk ELISA applied in population 1 were 26.4 % (8.5-60.2) and 95.8 % (92.1-99.2), respectively. Increasing Bmilk ELISA cut-offs had little influence on predictive values. The combination of both ELISA tests did not improve the diagnostic accuracy of S. Dublin. Our study shows that a test-positive herd based on a single bulk milk sample would require complementary tests for status confirmation. However, a test-negative herd could be classified as true negative with a high certainty.

摘要

酶联免疫吸附测定(ELISA)试验通常用于检测单个牛乳样本中针对都柏林沙门氏菌的抗体。然而,对于将其用于测定储奶罐牛奶以确定牛群水平的都柏林沙门氏菌感染状况,以及在不假定有完美参考试验的情况下进行评估时,其准确性了解甚少。本研究的目的是:i)估计加拿大魁北克省奶牛群中都柏林沙门氏菌的群体流行率;ii)估计一种市售ELISA试验用于储奶罐牛奶时的群体敏感性和特异性;iii)研究诊断试验准确性如何随不同的储奶罐牛奶ELISA临界值而变化;以及(iv)评估将储奶罐牛奶ELISA筛查与10头动物的个体血清相结合以确定都柏林沙门氏菌牛群感染状况的附加价值。招募了在三个地区选取的302个奶牛群(群体1)和58个已被检测出都柏林沙门氏菌呈阳性的牛群(群体2)。总共收集了715份储奶罐牛奶样本和7150份来自3月龄以上奶牛(每群10头动物)的个体血液样本,分两次采集。使用PrioCHECK™沙门氏菌都柏林牛抗体ELISA试验对牛奶(储奶罐牛奶ELISA:待研究的试验)和10头个体动物的血清(血清10 ELISA:不完美参考试验)进行检测,以确定牛群水平的都柏林沙门氏菌感染状况。在贝叶斯框架内拟合了一个针对两个群体、两种试验的潜在类别模型,该模型考虑了试验之间的条件依赖性。对于省级当局使用的储奶罐牛奶ELISA,当临界值PP%≥15时,在群体1中,使用信息性先验估计的都柏林沙门氏菌群体流行率为6.8%(4.3 - 9.9)。储奶罐牛奶ELISA的群体敏感性和特异性估计值(95%贝叶斯可信区间)分别为40.6%(15.6 - 88.8)和91.9%(88.3 - 95.8)。应用于群体1的储奶罐牛奶ELISA的阳性预测值和阴性预测值分别为26.4%(8.5 - 60.2)和95.8%(92.1 - 99.2)。提高储奶罐牛奶ELISA临界值对预测值影响不大。两种ELISA试验相结合并未提高都柏林沙门氏菌的诊断准确性。我们的研究表明,基于单个储奶罐牛奶样本检测呈阳性的牛群需要进行补充检测以确认感染状况。然而,检测呈阴性的牛群可以高度确定地被归类为真阴性。

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