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中国岭南地区特色民间药用植物线纹香茶菜((Sims)Little 1948)的叶绿体基因组结构与系统发育分析

Chloroplast genome structure and phylogenetic analysis of (Sims) Little 1948, a folk medicinal plant featured in Lingnan Region, China.

作者信息

Chen Aimin, Li Fang, Xie Xuena, Huang Rong, Tian Enwei, Chao Zhi

机构信息

Department of Pharmacy, Zhujiang Hospital, Southern Medical University, Guangzhou, People's Republic of China.

Faculty of Medicinal Plants and Pharmacognosy, School of Traditional Chinese Medicine, Southern Medical University, Guangzhou, People's Republic of China.

出版信息

Mitochondrial DNA B Resour. 2022 Jun 24;7(6):1160-1162. doi: 10.1080/23802359.2022.2087562. eCollection 2022.

DOI:10.1080/23802359.2022.2087562
PMID:35783069
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9246040/
Abstract

is the most widely spread and the most morphologically varied species of Chinese , and its roots and leaves serve as folk medicines. We sequenced the complete chloroplast (cp) genome of . The cp genome obtained was a circular DNA molecule of 159,825 bp in length, containing one large and one small single copy region (LSC and SSC) of 87,517 and 18,352 bp separated by a pair of 26,978 bp inverted repeat regions (IRs). The overall GC content of the cp genome was 38.40%. The phylogenetic analysis revealed that was strongly supported as a monophyletic group belonging to Clauseneae, and was closely related to . The results will provide the basis for the further study of molecular markers and phylogeny of .

摘要

是中国分布最广、形态变化最多的物种,其根和叶可作为民间药物。我们对其完整的叶绿体(cp)基因组进行了测序。获得的cp基因组是一个长度为159,825 bp的环状DNA分子,包含一个87,517 bp的大单拷贝区域和一个18,352 bp的小单拷贝区域(LSC和SSC),由一对26,978 bp的反向重复区域(IRs)隔开。cp基因组的总体GC含量为38.40%。系统发育分析表明,被强烈支持为属于吴茱萸族的一个单系类群,并且与密切相关。这些结果将为进一步研究的分子标记和系统发育提供依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df4/9246040/97dae43b0594/TMDN_A_2087562_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df4/9246040/97dae43b0594/TMDN_A_2087562_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df4/9246040/97dae43b0594/TMDN_A_2087562_F0001_C.jpg

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1
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Phytochemistry. 2021 Oct;190:112865. doi: 10.1016/j.phytochem.2021.112865. Epub 2021 Jul 24.
2
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.GetOrganelle:一个快速且通用的工具包,可用于准确从头组装细胞器基因组。
Genome Biol. 2020 Sep 10;21(1):241. doi: 10.1186/s13059-020-02154-5.
3
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.
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Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019.
4
MAFFT-DASH: integrated protein sequence and structural alignment.MAFFT-DASH:集成蛋白质序列和结构比对。
Nucleic Acids Res. 2019 Jul 2;47(W1):W5-W10. doi: 10.1093/nar/gkz342.
5
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.MEGA X:跨越计算平台的分子进化遗传学分析。
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549. doi: 10.1093/molbev/msy096.
6
GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
7
Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs.利用九对新的通用引物对高效测序被子植物全叶绿体基因组。
Mol Ecol Resour. 2014 Sep;14(5):1024-31. doi: 10.1111/1755-0998.12251. Epub 2014 Apr 7.
8
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
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9
Chemistry and biology of carbazole alkaloids.咔唑生物碱的化学与生物学
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