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基于 MD 模拟的筛选方法鉴定托伐普坦为 Eg5 的潜在抑制剂。

MD simulation-based screening approach identified tolvaptan as a potential inhibitor of Eg5.

机构信息

School of Biotechnology, National Institute of Technology Calicut, Calicut, Kerala, 673601, India.

出版信息

Mol Divers. 2023 Jun;27(3):1203-1221. doi: 10.1007/s11030-022-10482-w. Epub 2022 Jul 4.

Abstract

We discovered tolvaptan as a new Eg5 inhibitor using molecular dynamics simulation-based virtual screening. The Eg5-monastrol, Eg5-ispinesib, and Eg5-STLC complexes with "closed" L5 conformation obtained in MD simulation were used to generate a combined pharmacophore model, and this model was used during the process of virtual screening. Further, the MD simulation for 1 µs showed that the binding of tolvaptan to Eg5 was stable due to the closure of the α2/L5/α3 pocket. Tolvaptan belongs to the class of drugs called vaptans which are non-peptide vasopressin receptor antagonists. Since our virtual search for mitotic inhibitors identified tolvaptan as a potential candidate, we were interested in unraveling its antimitotic mechanism. Tolvaptan bound to purified Eg5-437H with a dissociation constant of 27 ± 3.8 µM. Tolvaptan inhibited the growth of HeLa cells through the mitotic block, and around 70% of these mitotic cells exhibited a characteristic monopolar spindle. Tolvaptan bound to goat brain tubulin with a dissociation constant of 103 ± 13 µM. The binding location of tolvaptan on tubulin overlapped with that of colchicine, according to molecular docking analysis. The combination of tolvaptan with STLC augmented mitotic bock with monopolar cells, whereas its combination with vinblastine increased mitotic block with bipolar cells. Since tolvaptan is found to have a significant cytotoxic effect on HeLa cells, it can be developed as a prospective anticancer agent either alone or in combination with other antimitotic drugs. Tolvaptan was identified as an inhibitor of Eg5 in a MD simulation-based virtual screening using a combined pharmacophore model.

摘要

我们使用基于分子动力学模拟的虚拟筛选发现托伐普坦是一种新的 Eg5 抑制剂。在 MD 模拟中获得的“关闭”L5 构象的 Eg5- 单体酶、Eg5- 伊匹斯替尼和 Eg5-STLC 复合物被用于生成组合药效团模型,该模型用于虚拟筛选过程中。进一步,1μs 的 MD 模拟表明,由于α2/L5/α3 口袋的关闭,托伐普坦与 Eg5 的结合是稳定的。托伐普坦属于被称为血管加压素受体拮抗剂的非肽类药物。由于我们对有丝分裂抑制剂的虚拟搜索将托伐普坦鉴定为潜在的候选药物,我们有兴趣揭示其抗有丝分裂机制。托伐普坦与纯化的 Eg5-437H 的解离常数为 27±3.8μM。托伐普坦通过有丝分裂阻断抑制 HeLa 细胞的生长,大约 70%的有丝分裂细胞表现出特征性的单极纺锤体。托伐普坦与山羊脑微管蛋白的解离常数为 103±13μM。根据分子对接分析,托伐普坦与微管蛋白的结合位置与秋水仙碱重叠。托伐普坦与 STLC 的结合增强了具有单极细胞的有丝分裂阻断,而与长春花碱的结合增加了具有双极细胞的有丝分裂阻断。由于托伐普坦被发现对 HeLa 细胞具有显著的细胞毒性作用,因此它可以单独或与其他抗有丝分裂药物联合开发为有前途的抗癌药物。托伐普坦在使用组合药效团模型的基于分子动力学模拟的虚拟筛选中被鉴定为 Eg5 的抑制剂。

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